Pairwise Alignments

Query, 220 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 230 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  120 bits (301), Expect = 2e-32
 Identities = 78/219 (35%), Positives = 117/219 (53%), Gaps = 6/219 (2%)

Query: 1   MNYQLNFAAVWRDFPSLLAGLGLGLELALLSIAIGCVIGLMMAFAMLSKHRALRVFASVY 60
           MNY L     + D P  L G+ + + LA+  I     +GL      LS+   +R  A VY
Sbjct: 10  MNYLL--VGSYPDGP--LGGMAMSILLAIGGIFGAFWLGLAFGLMRLSEKWWVRAPAIVY 65

Query: 61  VTVVRNTPILVLILLIYFALP-NLGIRLDKIPSFIITLSLYAGAYLTEVFRAGLLNIPKG 119
           V V+R  P+L+LI   YF  P  LG  L +  S +I   ++ GAY+ E+ RAG+L +P G
Sbjct: 66  VEVIRGIPLLMLIFWFYFLAPIALGHTLPEAESALIAFIVFTGAYIAEIVRAGVLALPAG 125

Query: 120 LREAGLAIGLGEWRIRAYITVPVMLRNVLPALSNNFISLFKDTSLAAAIAVPELTYYARK 179
             EA    GL + +   ++ +P  LRN++P+  N F+SL KDTSLA  I V ELT  A +
Sbjct: 126 QMEAARGTGLSKTQAMLFVILPQALRNMIPSFVNQFVSLTKDTSLAYIIGVSELTRTATQ 185

Query: 180 INVESYRV-IETWLVTTALYVAACYLIAMLLRYLEQRLA 217
           +N  +     E +L    +Y   C+++    R LE+++A
Sbjct: 186 VNNRTLTAPTEIFLTIALMYFVICWVLTATSRRLEKQMA 224