Pairwise Alignments

Query, 326 a.a., DNA-binding protein from Pseudomonas simiae WCS417

Subject, 315 a.a., transcriptional regulator, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  117 bits (293), Expect = 4e-31
 Identities = 91/314 (28%), Positives = 145/314 (46%), Gaps = 8/314 (2%)

Query: 6   QRIASDIDQMTEVAMLYYLENVTQEAIAKRFDLSRAKVSRLLKRARDEGIVEVRVLQHPA 65
           +R   D   ++ +A  YY+  +TQ  IA     SR +V+R+L+  RDEG V++ V    A
Sbjct: 2   ERAQHDHALLSRIAWAYYVNGMTQSDIASWLGTSRVRVNRMLQVCRDEGYVQIMVHSGKA 61

Query: 66  MNNELERALVERFKLDRALIAVDHSEPDTQRSAVASLVANYLNKTLSDGMIVAVGMGRNV 125
              E E+A+ +RF L RA++      P      +      YL   L +G   +VGMG   
Sbjct: 62  ACFEAEKAMEDRFGLRRAIVIPTPPTPRQLNRNLGHAAGYYLAGILKNG--TSVGMGY-- 117

Query: 126 GAVADNVFLPVTRNCTFVCAIGGSLKAGEYMNPDHICRRLALRFGGESE-SLYAPALVAN 184
            A A ++      + T V   GG L     +NP  I   +A R   E    + AP     
Sbjct: 118 -AAAASIPRKPAEHLTVVSLYGG-LPHSIVINPYEIVTTIARRVQAEQTFYIAAPMFAPT 175

Query: 185 PELRGVLINNDTVRSTLDRARRADIALIGIGDMSENSNMVRMGWFSPQEIAQARLSGTVG 244
           PE   +L +    ++   RA + D+ALIG+G+++ ++  V++G  S  ++     +G VG
Sbjct: 176 PETCRLLKSQALFKAVYARALQVDVALIGLGELAPDATNVQLGAISHDDVESLERAGAVG 235

Query: 245 DMMGYDFIDIHGQPAVNAIQGRVIGLTVPELFRIPDVVAIASENTKAAATLGALRSGVIN 304
           ++ G  F+D  G P ++      +G  + E+  IP  +A A    K      AL  G I+
Sbjct: 236 EVFG-TFVDAEGVPVLHPRNECFMGPDLEEVRAIPHSIAAAGGVKKTGIIRAALSGGFID 294

Query: 305 TLATTVTNAHTILA 318
            L T    A  +LA
Sbjct: 295 VLVTDEETATRLLA 308