Pairwise Alignments

Query, 495 a.a., xylitol ABC transporter, ATPase component (from data) from Pseudomonas simiae WCS417

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  357 bits (917), Expect = e-103
 Identities = 204/489 (41%), Positives = 297/489 (60%), Gaps = 2/489 (0%)

Query: 6   LLQAEHVAKAYAGVPALRDGRLSLRAGSVHALCGGNGAGKSTFLSILMGITQRDAGSILL 65
           +L    + KA+ GV AL    L++  G V AL G NGAGKST + +L GI  +DAGSI  
Sbjct: 5   ILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDAGSIEY 64

Query: 66  NGAPVQFNRPSEALAAGIAMITQELEPIPYMTVAENIWLGREPRRAGCIVDNKALNRRTR 125
            G PV F  P ++  AGI++I QEL  IP +T+AENI+LGRE       +    ++R+  
Sbjct: 65  QGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDEMHRKAD 124

Query: 126 ELLDSLEFDVDATSPMHRLSVAQIQLVEIAKAFSHDCQVMIMDEPTSAIGEHEAQTLFKA 185
           +LL  L     A + +  LS+ + Q+VEIAKA S + +V+IMDEPT A+ + E ++LF  
Sbjct: 125 QLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNV 184

Query: 186 IRRLTAQGAGIVYVSHRLSELAQIADDYSIFRDGAFVESGRMADIDRDHLVRGIVGQELT 245
           I  L  QG GIVY+SHRL E+ +I DD ++ RDG F+   R+ D + D L+  +VG++L 
Sbjct: 185 INELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMVGRKLE 244

Query: 246 RIDHKVGRECAANTCLQVDNLSRAGEFHDISLQLRQGEILGIYGLMGSGRSEFLNCIYGL 305
               ++  +   +  L+V  L+ +G  HD+S  L++GEILG+ GLMG+GR+E +  IYG 
Sbjct: 245 EQYPRIAAQ-QGDISLEVIGLTGSG-VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGA 302

Query: 306 TVADSGSVTLQGKPMPIGLPKATINAGMSLVTEDRKDSGLVLTGSILSNIALSAYKRLSS 365
             ++ G + L G+ +    P+  +  G++ ++EDRK  GLVL  S+  N++L A  +LS 
Sbjct: 303 LPSERGVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGLSVKENMSLCALDQLSK 362

Query: 366 WSLINARKETQLAEDMVKRLQIKTTSLELPVASMSGGNQQKVVLAKCLSTEPVCLLCDEP 425
              I    E    +D ++   IKT S E  + ++SGGNQQKV +AK L T+P  L+ DEP
Sbjct: 363 GVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEP 422

Query: 426 TRGIDEGAKQEIYHLLDQFVRGGGAAIVVSSEAPELLHLSDRIAVFKGGRLVTISTDTAL 485
           TRG+D GAK+EIY L++QF   G + I+VSSE PE+L +SDRI V   GR+      +  
Sbjct: 423 TRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEA 482

Query: 486 SQEALLRLA 494
            QE L+  A
Sbjct: 483 DQEKLMACA 491



 Score = 69.7 bits (169), Expect = 2e-16
 Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 21/234 (8%)

Query: 22  LRDGRLSLRAGSVHALCGGNGAGKSTFLSILMGITQRDAGSILLNGAPVQFNRPSEALAA 81
           + D   +L+ G +  + G  GAG++  + ++ G    + G I LNG  V    P + LA 
Sbjct: 269 VHDVSFTLKKGEILGVSGLMGAGRTELMKVIYGALPSERGVINLNGRTVNPVSPQDGLAN 328

Query: 82  GIAMITQELEP---IPYMTVAENIWLGREPRRAGCIVDNKALNRRTRELLDSLEFD---- 134
           GIA I+++ +    +  ++V EN+ L        C +D  +   + R   + +  D    
Sbjct: 329 GIAYISEDRKGDGLVLGLSVKENMSL--------CALDQLSKGVQIRHADEVIAVDDFIR 380

Query: 135 -VDATSPMHR-----LSVAQIQLVEIAKAFSHDCQVMIMDEPTSAIGEHEAQTLFKAIRR 188
             +  +P        LS    Q V IAK      +V+I+DEPT  +     + +++ I +
Sbjct: 381 LFNIKTPSREQIIGNLSGGNQQKVAIAKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQ 440

Query: 189 LTAQGAGIVYVSHRLSELAQIADDYSIFRDGAFVESGRMADIDRDHLVRGIVGQ 242
             A+G  I+ VS  + E+  ++D   +  +G        ++ D++ L+   VG+
Sbjct: 441 FKAEGMSIILVSSEMPEVLGMSDRILVMHEGRISGEFMASEADQEKLMACAVGR 494