Pairwise Alignments

Query, 335 a.a., xylitol ABC transporter, substrate-binding component (from data) from Pseudomonas simiae WCS417

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 90.5 bits (223), Expect = 5e-23
 Identities = 76/288 (26%), Positives = 138/288 (47%), Gaps = 13/288 (4%)

Query: 1   MKLGTTLAATAALSLLACSIAMAADGKTYKVGAAVYGLKGQFMQNWVRELKEHPAVKDGT 60
           MK  TTL + A LS     +A A D     V   +  L   F    +++  E  A + G 
Sbjct: 3   MKKLTTLISAALLSTSVSFVAQAQD----TVAIVLSTLNNPFFVT-MKDGAEAKAKELG- 56

Query: 61  VQLTVFDGNYDALTQNNQIENMVTQRYDAILFVPIDTKAGVGTVKAAMSNDVVVIASNTK 120
             L V D   D   + + +E++  +   AIL  P D+ A    ++ A  + + V+  +  
Sbjct: 57  YNLIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRG 116

Query: 121 VADASV-PYVGNDDVEGGRLQAQAMVDKLNGKGNVVIIQGPIGQSAQIDREKGELEVLGK 179
            +   V  ++ +D+V GG +    +  K+     V+ ++G  G SA  +R +G +  + K
Sbjct: 117 ASRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV-K 175

Query: 180 HPDIKIIEKKTANWDRAQALALTEDWLNAHPKGINGVIAQNDDMALGAVQALKSHGLTSK 239
              ++++  + A++DR + L + E+ L A+P  +  V AQND+MALGA++A+++ G   K
Sbjct: 176 GSKMQLLASQPADFDRTKGLNVMENLLAANPD-VQAVFAQNDEMALGALRAIQASG---K 231

Query: 240 DVPVTSIDGMPDAIQAAKKDEV-TTFLQDAQAQSQGALDVALRALAGK 286
            V +   DG  D I A ++ ++  T  Q         ++ A + L G+
Sbjct: 232 SVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGE 279