Pairwise Alignments

Query, 335 a.a., xylitol ABC transporter, substrate-binding component (from data) from Pseudomonas simiae WCS417

Subject, 314 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Herbaspirillum seropedicae SmR1

 Score =  106 bits (264), Expect = 9e-28
 Identities = 91/299 (30%), Positives = 148/299 (49%), Gaps = 23/299 (7%)

Query: 12  ALSLLACSI----AMAADGKTYKVGAAVYGLKGQF---MQNWVRELKEHPAVKDGTVQLT 64
           A++ LAC++    AMA      KV   +  L  +F   M+N  RE ++  A K   +   
Sbjct: 10  AIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANASKFDLIANG 69

Query: 65  VFDGNYDALTQNNQIENMVTQRYDAILFVPIDTKAGVGTVKAAMSNDVVVIASNTKVADA 124
           + D   D   Q   +E M+  + +A++  P D+KA V  VK A+   ++V+  + K+ DA
Sbjct: 70  IKD-EQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVNIDNKLDDA 128

Query: 125 -------SVPYVGNDDVEGGRLQAQAMVDKLNGKGNVVIIQGPIGQSAQIDREKGELEVL 177
                  +VP+VG D+ +G +L    +  +L     V II+G         R  G  + +
Sbjct: 129 ALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQRTLGFQDAM 188

Query: 178 GKHPDIKIIEKKTANWDRAQALALTEDWLNAHPKGINGVIAQNDDMALGAVQALKSHGLT 237
            K     ++  ++  W+  Q   +    LNAHP  I  ++A ND+MALGAV A+++ G T
Sbjct: 189 -KDVGANVVTVQSGQWEIDQGNKVAASILNAHP-DIKAILAGNDNMALGAVAAIRAAGKT 246

Query: 238 SKDVPVTSIDGMPDAIQAAKKD--EVTTFLQDAQAQSQGALDVALRALAGKDYKPQSVI 294
            K V +   D + +AI+   KD   + T  Q AQ Q+   ++ AL+AL+ K  KPQS +
Sbjct: 247 GK-VQLVGYDNI-NAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSEK--KPQSAL 301