Pairwise Alignments

Query, 192 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 74.7 bits (182), Expect = 9e-19
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 10/187 (5%)

Query: 1   MKDSDPDVELLVRIGNNDPAAVNEMVTRKLPRLLALASRILGDADEAKDVAQESFLRIWR 60
           M +   D  L+ R+ N D  A N +V R   ++  L SR + ++ +  DVAQE+F++ +R
Sbjct: 1   MNEQLTDQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYR 60

Query: 61  QAASWRSGEARFDTWLHRVALNLCHDRLRRRKQRP------LSEEEVLELADSAAPLDEQ 114
              ++R GE+ F TWL+R+A+N   + +  + +RP        E E  E  D+   L   
Sbjct: 61  AIPTFR-GESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNP 119

Query: 115 LE---SADRSARMAAALAALPERQREAIVLQYYQELSNIDAAALMNISVEALESLLSRAR 171
                S +    +  A+ ALP+  + A+ L+    LS  + A +M+  V  + S + RAR
Sbjct: 120 ENITLSKELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAR 179

Query: 172 RQLRSQL 178
             +  ++
Sbjct: 180 EAVEKKI 186