Pairwise Alignments

Query, 192 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 196 a.a., RNA polymerase sigma factor from Synechococcus elongatus PCC 7942

 Score = 71.2 bits (173), Expect = 1e-17
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 7   DVELLVRIGNNDPAAVNEMVTRKLPRLLALASRILGDADEAKDVAQESFLR-IWRQAASW 65
           D +L   +     AA+  +  R    +  +A ++LG+  EA+D+ Q+ F+R + RQ + +
Sbjct: 16  DQDLWSELQQGQVAALARLYDRHAGLVYGIAMQVLGNPQEAEDLTQDIFIRLVDRQHSHY 75

Query: 66  RSGEARFDTWLHRVALNLCHDRLRRRKQRPLSEEEVLELADSAAPLDEQLES---ADRSA 122
            S      T+L  +  +   DRLR R+ +  + E V       A  D  + S   A+ SA
Sbjct: 76  DSKRGSLRTYLAVLTRSRAIDRLRSRRTQASAIERVQNQVKQEATEDPPIASLGAAETSA 135

Query: 123 RMAAALAALPERQREAIVLQYYQELSNIDAAALMNISVEALESLLSRARR---QLRSQLA 179
            +  ALA LPE Q++ + L YY+ LS  D A  ++   E L ++ +RARR   +LR  L 
Sbjct: 136 EVQKALAQLPESQQQVLRLAYYEGLSQSDIAERLS---EPLGTIKARARRGLLKLRQMLQ 192

Query: 180 D 180
           D
Sbjct: 193 D 193