Pairwise Alignments

Query, 192 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 187 a.a., Alternative RNA polymerase sigma factor SigK from Mycobacterium tuberculosis H37Rv

 Score = 68.2 bits (165), Expect = 9e-17
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 7/179 (3%)

Query: 4   SDPDVELLVRIGNNDPAAVNEMVTRKLPRLLALASRILGDADEAKDVAQESFLRIWRQAA 63
           SD D  LL R+  +D AA  E       R+  L  R+L D   +++  QE +L +WR A+
Sbjct: 9   SDLDA-LLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYLEVWRNAS 67

Query: 64  SWRSGEARFDTWLHRVALNLCHDRLRRRKQRPLSEEEVLELADSAAPLDEQLE----SAD 119
            + S +     WL  +A     DR+  R ++  ++ EV   A +  P  + +     + D
Sbjct: 68  EFDSAKGSALAWLLTMAHRRAVDRV--RCEQAGNQREVRYGAANVDPASDVVADLAIAGD 125

Query: 120 RSARMAAALAALPERQREAIVLQYYQELSNIDAAALMNISVEALESLLSRARRQLRSQL 178
              R+   L AL + QR+ I L YY  L+ ++ +  +  ++  ++S +  A R LR+ L
Sbjct: 126 ERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSLRNCL 184