Pairwise Alignments

Query, 833 a.a., ligand-gated channel from Pseudomonas simiae WCS417

Subject, 857 a.a., TonB-dependent siderophore receptor from Synechocystis sp000284455 PCC 6803

 Score =  261 bits (666), Expect = 2e-73
 Identities = 201/673 (29%), Positives = 323/673 (47%), Gaps = 63/673 (9%)

Query: 152 TKTDTALIETPQSISIVTKDQMRAQNAESLNQILRYSAAVIPETRGATASRLDQLTIRGF 211
           T TDT +++TP S  +V+++ +R+Q A +L  +L   ++V     G T  R     IRGF
Sbjct: 206 TGTDTPIMDTPFSAQVVSEEVIRSQQAITLEDVLTNVSSVT--FGGTTGGRETIFGIRGF 263

Query: 212 ------SPATYLDGLRMPSSRDALPQKDAFDLERVEVLRGPASVLYGQGTPSGVINMVSK 265
                 +     DG R+      + +     L++VEVL+GP+S+LYGQ  P GVIN+ SK
Sbjct: 264 GNQFSDTVPILRDGFRLYGGFQGITEVS--HLQQVEVLKGPSSILYGQIEPGGVINLNSK 321

Query: 266 RPLDTPFHEVGVEYGTFNKKRTTFDLSGPMDDQGVYSYRVAGLF-DDADGQVEHTETRRQ 324
           +PL+ PF EV V+ G     R  FD+SG ++  G   YR+ G++ ++A  +  +    R 
Sbjct: 322 KPLNEPFAEVEVQLGNQGLVRPRFDISGGLNPSGNLRYRLNGVYSNEASFRDFNQPLERF 381

Query: 325 SLSSAFTWRPDDATSLTLLGHFQKDPKGASYGSVPAWGSVLHSPTGRSIDVDFYDGEKNF 384
           + +   T+   D T L+L   +  D   A +G       V   P  R I+       KNF
Sbjct: 382 AYAPIVTYAITDDTDLSLAVEYINDTNPADFGLSSFGDGVAPVPRSRVINDPSDIVNKNF 441

Query: 385 EKSDREYYSIGWAFEHHFDDVWTVRQNARYLRSEGQYRSLYSNYLMADYRTIRRSTIASD 444
                   S G+  EH F++ W +R   RY+     Y ++ +   + +  T+ R     D
Sbjct: 442 -------ISAGYNLEHRFNENWKLRNAFRYMSYNYDY-NVIALPTIVNGPTVTRFFADQD 493

Query: 445 VDLDAYTLDNQVQAKFDTGPLQHTLLMGLDYQNTSTDTLSGSGVYTAGPT-LDIFNPVYG 503
               +Y+       KF TG ++H LL G+DY  +    L+  G    GPT +++F+P Y 
Sbjct: 494 GQQGSYSFYTNAVGKFSTGSVKHELLAGIDYNWSEESILTLFG----GPTSINVFDPDYN 549

Query: 504 AAVPVPAYTT-----DGTSRSEQTGVYLQEQMK-WDKWVLLLGGRYDWASTD-NSTQTLS 556
            A+P P  +      D  + S + G+YLQ+Q+   +  +L+ G RYD  + + N+ QT  
Sbjct: 550 -AIPKPNRSDLPLFGDTFTSSNRLGIYLQDQVSLLENLILVAGLRYDTITQNTNNLQTDF 608

Query: 557 SGAKSKSSLDSKAFTGRIGLVYLFDNGLAPYASYAESFNPQSGTGYGGSVFKPTEGKQYE 616
           +   +    DS A T RIGL+Y     ++ +++Y++SF P SG    G+  +P  G+ +E
Sbjct: 609 NQGGNTQQTDS-AVTPRIGLLYRPIPEISFFSNYSQSFTPNSGIDISGNPLEPERGEGFE 667

Query: 617 IGIKYQPPGSNSFITAAIFDLRQTNVLTTDP-DPTHLCGTGRCQSQDGEVQSRGFELEGK 675
           IG+K +        T   F++ + NV  +DP +P  L       S  G  QS+G EL+  
Sbjct: 668 IGVKAELFEQQLLTTLTYFNISKNNVAVSDPVNPLFL-------STIGTQQSQGIELDIV 720

Query: 676 ASLNDNLDITAAYAYLDNRISKSNNTVRYAPISDIGVGPAIAAEGTTTYGVPRHTASAWA 735
             +     I   Y+Y++ ++++  +             P         +G+P + A+ W 
Sbjct: 721 GEILPGWKIIGNYSYINAKVTEDTD-------------PNFV--DNRLFGIPYNMANLWT 765

Query: 736 DYTVHDGKLKGFGVGAGARYVGSSWGDTANTLKVPGYTLFDAAVHYDIPNIARLKDNLRL 795
            Y +  G L+G G G G  YVG  +GD ANT  V  Y + +AA+ Y        +D  R+
Sbjct: 766 TYEIQSGALQGLGFGIGFNYVGDRFGDLANTYTVGDYIIGNAAIFYQ-------RDKYRV 818

Query: 796 ALNATNLANKEYV 808
           ALN  N  N  YV
Sbjct: 819 ALNLRNFTNANYV 831