Pairwise Alignments

Query, 531 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 672 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  132 bits (333), Expect = 3e-35
 Identities = 85/262 (32%), Positives = 132/262 (50%), Gaps = 2/262 (0%)

Query: 89  LSAAAVAYSVKQLAA--RLQSQLGAAKQIVSSAEVMIGTEKLTSQLSRDALGAASQAHQR 146
           L+A A       L+A  +L SQ      + ++   M  + +  +  ++++L    Q    
Sbjct: 404 LTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSLAMVQQVETA 463

Query: 147 STEGREVLTQSITRMHQLSQRANASRELIEALSLRSEEIQRVTLVIQSIASQTNLLALNA 206
           S  GR++++ +I+ + QL  R   S E +  L   S +I  +  VI++IA QTNLLALNA
Sbjct: 464 SESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQIGSILDVIRNIAEQTNLLALNA 523

Query: 207 AIEAARAGEHGRGFAVVADEVRGLAGRTATATDEVGVMVADIQQRTVQVVEQIRQLSTDL 266
           AIEAARAGE GRGFAVVADEVR LA RT  +T E+  M++++Q  +    + I     D+
Sbjct: 524 AIEAARAGEQGRGFAVVADEVRVLAQRTTQSTSEIESMISNLQSSSSLASKVIESCMQDM 583

Query: 267 QTGVEQVEHAGEQLQNIARLSADVEGQVNEIAQGTDTNRTQLDSLFHAVEQMRSDLAVSD 326
           +  VEQ  HA   ++ I  L  ++      I+Q          S+  ++E +      S 
Sbjct: 584 ELSVEQASHANSAMEEIQALIIEISHMSTHISQAAGEQNETTTSIARSIEDINHISDESY 643

Query: 327 QQTRQLADAAVQMEGQAETISE 348
           Q   Q+A  +  +   A   SE
Sbjct: 644 QAMSQIAQTSANLTALANQQSE 665



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 27/175 (15%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 183 EEIQRVTLVIQSIA--SQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLAGRTATATDE 240
           E + R+   ++S+   + T  + +    E +R   H      +AD +  +  +  +A+D+
Sbjct: 347 EPVTRILKTLESLTQGNMTQRIEIRYNNEFSRLSRHINS---LADNLHDILVKLNSASDD 403

Query: 241 VGVMVADIQQRTVQVVEQI---RQLSTDLQTGVEQVEHAGEQLQNIARLSADVEGQVNEI 297
           +    +  Q  ++    ++   R+ ++ +   + ++ H+ +++ N A+ S      V ++
Sbjct: 404 LTATASTNQTTSLSAQNKLNSQREQTSSVAAAMTEMAHSVQEVANSAQNSL---AMVQQV 460

Query: 298 AQGTDTNRTQLDSLFHAVEQMRSDLAVSDQQTRQLADAAVQMEGQAETISERLAE 352
              +++ R  + +    + Q+ + L  S +    L   + Q+ G    +   +AE
Sbjct: 461 ETASESGRQIMSTNISTIRQLETRLIESVEAVGDLRKMSSQI-GSILDVIRNIAE 514