Pairwise Alignments

Query, 531 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 583 a.a., methyl-accepting chemotaxis protein from Rhodopseudomonas palustris CGA009

 Score =  120 bits (301), Expect = 1e-31
 Identities = 122/487 (25%), Positives = 201/487 (41%), Gaps = 57/487 (11%)

Query: 85  SHNALSAAAVAYSVKQLA----ARLQSQLGAAKQIVSSAEVMIGTEKLTSQLSRD----A 136
           +H+A    A      QLA    A         +++  S+  +     L SQ++R     A
Sbjct: 105 THSAHGIGAQVRQASQLADDASAAADEATANVERLRDSSAAIGNVVNLISQIARQTTLLA 164

Query: 137 LGAASQAHQRSTEGRE---VLTQSITRMHQLSQRANASRELIEAL----SLRSEEIQRVT 189
           L +  +A +    GR    V T+      Q  +     +  I+AL    S  ++ + R+T
Sbjct: 165 LNSTIEAARAGAAGRGFAVVATEVKALAVQTQEATEEIKRKIDALQRDASSSADAVHRIT 224

Query: 190 LVIQSIASQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLAGRTATATDEV-------G 242
             I +I      +    A + A  GE   G A  A       G +A   D         G
Sbjct: 225 SAISAIRPVFETVNGAVAEQNATTGEIA-GNATSASTFIASVGDSAAEIDSATREAEQHG 283

Query: 243 VMVADIQQRTVQVVEQIR-QLSTDLQTGVEQVEHAGEQLQNIARLSAD-----VEGQVNE 296
             VA   Q      E++R + +  L+ G  +     E+L    ++  D     +   V E
Sbjct: 284 DEVARAGQNVTNFAEKLRARTAVLLKLGDREDARRREKLPCHLQIELDTSRGRITAPVYE 343

Query: 297 IAQ----------GTDTNRTQLDSLFHAVEQMRSDLAVSDQQTRQLA-----DAAVQMEG 341
           I+              T   QL +    +   R  +A    +   LA     DAA+Q   
Sbjct: 344 ISMDGVLISGPSAAALTTGQQLSAELQDIGACRIRIA-EHGKAGALALFVAPDAALQ--- 399

Query: 342 QAETISERLAEVGLDDYHQRIYDLAREGASQIAAQFEADVQQNRISLDDLFDRSYTLIAN 401
               + +RL  +   D +      A E   +++  FE  +    ++L+ +FD +Y  IA 
Sbjct: 400 --NRVEDRLWAIR--DENTEFVTRAIEAGHELSKIFERGIASGALTLEQMFDENYIEIAG 455

Query: 402 TSPSKYHTRFDGYTDQVLPAIQEALLPRHEGLVFAIACTPQGYVPTHNKAFS-HALTGDV 460
           T P +Y T++  + D+ LP  QE+ L ++  + F +     GY+P HNK +S     GDV
Sbjct: 456 TDPKQYRTQYLDWADRALPPFQESFLAKNRRMAFCVMIDRNGYLPVHNKLYSLPQRPGDV 515

Query: 461 QVDAVQNRTKRKFEDRTGIRCGSHQQAVLLQTYTRDTG----ELMHDLSVPIMVKGRHWG 516
             +   +R +R F D  G+  G + ++ L+Q+Y RD G     +M ++ VP+ V+GRHWG
Sbjct: 516 AFNTANSRNRRIFNDPAGLAAGRNTRSFLIQSYARDMGGGQTVMMREIDVPVRVRGRHWG 575

Query: 517 GLRLGYK 523
           G R  YK
Sbjct: 576 GFRTAYK 582



 Score = 81.3 bits (199), Expect = 9e-20
 Identities = 87/318 (27%), Positives = 142/318 (44%), Gaps = 34/318 (10%)

Query: 93  AVAYSVKQLAARLQSQLGAA-KQIVSSAE-VMIGTEKLTSQLSR-----DALGAA----- 140
           A A S +++   L+ +LG+  +Q+  +A  V  G +  TS L       DAL        
Sbjct: 32  AEADSAREILELLELELGSLIRQLERAAHSVTTGVQSTTSTLHTIRERTDALSGRTSAAQ 91

Query: 141 ------SQAHQRSTEGREVLTQSITRMHQLSQRANASREL----IEALSLRSEEIQRVTL 190
                 SQA  + T     +   + +  QL+  A+A+ +     +E L   S  I  V  
Sbjct: 92  TTASSFSQAADKFTHSAHGIGAQVRQASQLADDASAAADEATANVERLRDSSAAIGNVVN 151

Query: 191 VIQSIASQTNLLALNAAIEAARAGEHGRGFAVVADEVRGLAGRTATATDEVGVMVADIQQ 250
           +I  IA QT LLALN+ IEAARAG  GRGFAVVA EV+ LA +T  AT+E+   +  +Q+
Sbjct: 152 LISQIARQTTLLALNSTIEAARAGAAGRGFAVVATEVKALAVQTQEATEEIKRKIDALQR 211

Query: 251 RTVQVVEQIRQLSTDLQTGVEQVEHAGEQLQNIARLSADVEGQVNEIAQGTDTNRTQLDS 310
                 + + ++++ + + +  V       + +    A+      EIA    +  T + S
Sbjct: 212 DASSSADAVHRITSAI-SAIRPV------FETVNGAVAEQNATTGEIAGNATSASTFIAS 264

Query: 311 LFHAVEQMRSDLAVSDQQTRQLADAAVQMEGQAETISERLAE-VGLDDYHQRIYDLAREG 369
           +  +  ++ S    ++Q   ++A A   +   AE +  R A  + L D      D  R  
Sbjct: 265 VGDSAAEIDSATREAEQHGDEVARAGQNVTNFAEKLRARTAVLLKLGDRE----DARRRE 320

Query: 370 ASQIAAQFEADVQQNRIS 387
                 Q E D  + RI+
Sbjct: 321 KLPCHLQIELDTSRGRIT 338