Pairwise Alignments

Query, 531 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 626 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  131 bits (329), Expect = 8e-35
 Identities = 87/232 (37%), Positives = 128/232 (55%), Gaps = 9/232 (3%)

Query: 110 GAAKQIVSSAEVMIGTEKLTS---QLSRDALGAASQ---AHQRSTEGREVLTQSITRMHQ 163
           GA +Q     E  +  E++ +    ++R+A  AA+    A  ++ +G   + Q +  + Q
Sbjct: 374 GAGRQRARVGETSVSMEEMNATVLDVARNAGQAATTSEAARAKAQQGAGGVEQVVASVAQ 433

Query: 164 LSQRANASRELIEALSLRSEEIQRVTLVIQSIASQTNLLALNAAIEAARAGEHGRGFAVV 223
           + + A + RE + ALS R++ I ++  VI  IA QTNLLALNAAIEAARAGE GRGFAVV
Sbjct: 434 VEREAASLRESMGALSKRADAIGQIMSVISDIADQTNLLALNAAIEAARAGEAGRGFAVV 493

Query: 224 ADEVRGLAGRTATATDEVGVMVADIQQRTVQVVEQIRQLSTDLQTGVEQVEHAGEQLQNI 283
           ADEVR LA +T  AT EV   +  IQQ T +    +   S  +    E    AGE L  I
Sbjct: 494 ADEVRKLAEKTMNATKEVDSAIRGIQQGTGESSRNVDAASRAVGEAAEHARAAGESLGEI 553

Query: 284 ARLSADVEGQVNEIAQGTDTNRTQLDSLFHAVEQMRSDLAVSDQQTRQLADA 335
            RL+  V  Q+  IA  ++   +  +S+ HA++ +     V+D  +R + DA
Sbjct: 554 VRLAEQVSDQIRSIATASEEQSSSSESIAHALDGV---AGVADDTSRAMDDA 602



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 49/236 (20%), Positives = 98/236 (41%), Gaps = 27/236 (11%)

Query: 185 IQRVTLVIQSIASQTNLLA---LNAAIEA---ARAGEHGRGFAVVADEVRGLAGRTATAT 238
           I+ +   + S+AS    +A   L A +     A  GE       + + +R         T
Sbjct: 252 IRSIRRPLDSLASYARKVADGDLGAHVSGSFIAEFGELKHSLETMVEALRTKIAEAQEKT 311

Query: 239 DEVGVMVADIQQRTVQVVEQIRQLSTDLQTGVEQVEHAGEQLQ----NIARLSADVEGQV 294
           DE  +M    +++T    E  R+ +   ++  E +  A  QL+    ++ R ++ + G V
Sbjct: 312 DEASIMARRAEEQT-HAAEAAREEAERARS--EGMVDAANQLEAIVRDVGRAASALTGLV 368

Query: 295 NEIAQGTDTNRTQLDSLFHAVEQMRS---DLAVSDQQTRQLADA----AVQMEGQAETIS 347
              A+G    R ++     ++E+M +   D+A +  Q    ++A    A Q  G  E + 
Sbjct: 369 RVAAEGAGRQRARVGETSVSMEEMNATVLDVARNAGQAATTSEAARAKAQQGAGGVEQVV 428

Query: 348 ERLAEVGLDDYHQRIYDLAREGASQIAAQFEADVQQNRISLDDLFDRSYTLIANTS 403
             +A+V      +R     RE    ++ + +A + Q    + D+ D++  L  N +
Sbjct: 429 ASVAQV------EREAASLRESMGALSKRADA-IGQIMSVISDIADQTNLLALNAA 477