Pairwise Alignments

Query, 340 a.a., Inositol transport system permease protein (from data) from Pseudomonas simiae WCS417

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  211 bits (538), Expect = 2e-59
 Identities = 127/291 (43%), Positives = 178/291 (61%), Gaps = 24/291 (8%)

Query: 56  LVLMILQVSIIGLLAIGVTQVIITTGIDLSSGSVLALSAMIAASLAQTSDFSRAVFPSLT 115
           L+ ++ Q S+  ++A+G+T VI+T GIDLS GSVLAL    AA+L               
Sbjct: 58  LLNILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAM------------ 105

Query: 116 DLPVWIPVAMGLGVGLLAGAINGSIIAVTGIPPFIATLGMMVSARGLARYYTEGQPVSM- 174
           ++PV + V   L  G   GAI+G IIA   +  FIATL  M   RG+   YT+G+P+S  
Sbjct: 106 EVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTG 165

Query: 175 ---LSDSYTAIGHG---AMPVIIFLVVAVIFHI--ALRYTKYGKYTYAIGGNMQAARTSG 226
               +D++   G G    +PV ++L+V V       L +T++G+Y YA+GGN  A R SG
Sbjct: 166 FTDTADTFAWFGTGYTLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSG 225

Query: 227 INVKRHLIIVYSIAGLLAGLAGVVASARAATGQAGMGMSYELDAIAAAVIGGTSLAGGVG 286
           INV R  I VY+I GLLA LAG++ ++R ++ Q   GM YELDAIAA V+GGTSL GG G
Sbjct: 226 INVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKG 285

Query: 287 RITGTVIGALILGVMASGFTFVGVDAYIQDIIKGLIIVVAVVIDQYRNKRK 337
           RI GT+IGALI+G + +    + V +Y Q I K ++I++AV++D   NK K
Sbjct: 286 RIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVILLAVLVD---NKNK 333