Pairwise Alignments

Query, 463 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 449 a.a., sensor protein CpxA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  109 bits (273), Expect = 2e-28
 Identities = 79/275 (28%), Positives = 145/275 (52%), Gaps = 17/275 (6%)

Query: 179 WHLLRRRPLRRIRGIQASAEAIVAGDLTHRLP--LSNRRDELDMLAAIVNAMLDRIEKLM 236
           WHL   +PLR ++    SA+A+  GDL++R+    + R DE+  LA   N+M D IE ++
Sbjct: 179 WHL--GKPLRSLK---KSADALAEGDLSNRVDKTTTQRNDEIGQLATAFNSMADSIEAMV 233

Query: 237 NEVKGVCDNIAHDLRTPLTRLRAQLYRIKQEAEAESDYAVKLDDAIAETDTLMARFRGLL 296
              + +  +I+H+LRTPLTRL+  L   +++ +  ++     D    E + L      LL
Sbjct: 234 KNQQRLMGDISHELRTPLTRLQLSLALARKKGQQTTE----TDRIAYEAEQLEQLIAELL 289

Query: 297 RISELEDHQRRSGFLVMDPLPLLRELHDFYLPLAEEGELQLRLETPESLPWITGDRALLF 356
            +S ++     +   +     L + L D      ++G+ ++ ++  E++  ++     L 
Sbjct: 290 ELSRVKLSTNETKVCLGLAESLSQVLDDAEFEADQQGK-KITIDIDEAIE-LSHYPKSLS 347

Query: 357 EALANLLSNSIKFSPPGGEVILRGVNDAGSTRLEVHDSGPGIPAAERDAVFQRFYRVDES 416
            A+ NLL N+I+++    ++ L     +G  ++ + D GPGI  AE +++F+ FYR D +
Sbjct: 348 RAIENLLRNAIRYAK--SDIHLHASQTSGQVQITIKDDGPGIDPAELESIFKPFYRPDSA 405

Query: 417 DQQ--GGFGLGLSIVAAIINLHGFRLEVGTSERGG 449
            Q+  GG+GLGL+I  A I+ H  +++    E  G
Sbjct: 406 RQRESGGWGLGLAITEAAISAHKGKIKAENREPHG 440