Pairwise Alignments

Query, 621 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  281 bits (718), Expect = 7e-80
 Identities = 198/601 (32%), Positives = 304/601 (50%), Gaps = 27/601 (4%)

Query: 22  RLPQAPVPSLIFDSWRRSMEQHHLDPGSLQGPRILSEPLLRECRERADLFMRIASEEVGQ 81
           +L Q    + + +SW+RS +         Q  R+    L    +E A L   ++   +  
Sbjct: 3   QLQQLSHVNWLVNSWQRSEQAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPL 62

Query: 82  LHHRVRHADYCVMLTDAQGQTIDHRVDTSIRNDCRKAGLYLGTCWSEAEEGTCGVATVLT 141
            +    H+D  ++LTD  G  I        R    +  L  G CW E  +GT  + T L 
Sbjct: 63  FYQLFAHSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALI 122

Query: 142 SQSAVTVHKRDHFRAAFIGLTCSAAPIFDPQGNLLGVMDASALKSPDDRRSQHLVRQMVA 201
            Q  ++V    HF      ++CSA+PIFD  G L+GV+D ++ +      +Q +V+ MV 
Sbjct: 123 EQKPISVIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMV- 181

Query: 202 QSAQAIENAFFMHSARQHWVLQAHSTPGYVDSQPDLLLAWDQDGRLHALNSKARQALRRR 261
              Q +EN         H  +     P  + S    ++  D+ G++ A N  A Q L + 
Sbjct: 182 ---QLVENQLLNQIPHGHVRIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQ- 237

Query: 262 FGQVPEHIGDVFDLDALRAVTHDATQQLPWLGEPGVLHVRVNAPRRKPARAAVIPLVDAR 321
            G+V   IG   +    R  TH +     ++     LH + +  R     A+ +   DA 
Sbjct: 238 -GRV---IGQSVEQVLPRPQTHAS-----FIYTTTPLHSKQHRTRALTP-ASDLHFGDAE 287

Query: 322 VEEHLRLALRVKNRNLPVLVQGETGAGKEVFARQLHERSARHTGPFVAVNCAAIPENLIE 381
           VE   + A RV ++++ +L+ G+TG GK  F + LH+ S R  GP VAVNC A+ + L+E
Sbjct: 288 VERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQRKNGPLVAVNCGALAKELVE 347

Query: 382 SELFGYVAGAFTGASSKGMPGLLVQADGGTLFLDEIGDMPLALQTRLLRVMAEGEVAPLG 441
           +ELFGYVAGAFTGAS KG  G +  AD G LFLDEI D+PL  Q+RLL V+ +  V P+G
Sbjct: 348 AELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPLDAQSRLLHVLQDKTVLPVG 407

Query: 442 AAKTRAVDIHVICASHRDLSVLVSEGRFREDLFFRLGCARFCLPPLRERTDKLALINRLL 501
           +     VDI +I A+H++L  LV++G FR+DL++RL      LP  ++R D+ ALI+ + 
Sbjct: 408 SNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVVELPSFQQRQDRQALIHHI- 466

Query: 502 EQEARNSRVSVGIAPSALQLLLGYAWPGNVRQLRHVLAYACAVCEG-GTVQVADLPVEVR 560
               R S     I    +Q LL Y WPGN+R+L  ++  A  + EG G +    LP  + 
Sbjct: 467 --HRRYSDAGQQICGDLMQRLLAYHWPGNLRELDSLIKVASLMAEGEGVLTFNHLPTHLA 524

Query: 561 GE-QVAAP--TEDRASPERQVVLDALIRHRWKPL-----PTAQALGISRATLYRRVNQLG 612
            +   AAP  TED    + +  ++A +   ++        T++ LG+SR T+YR++  LG
Sbjct: 525 QKLSHAAPTATEDDQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALG 584

Query: 613 I 613
           I
Sbjct: 585 I 585