Pairwise Alignments

Query, 621 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 653 a.a., Sigma54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains (NCBI) from Rhodospirillum rubrum S1H

 Score =  303 bits (775), Expect = 2e-86
 Identities = 216/623 (34%), Positives = 299/623 (47%), Gaps = 51/623 (8%)

Query: 24  PQAPVPSLIFDSWRRSMEQHHL--DPGSLQGPRILSEPLLRECRERADLFMRIASEEVGQ 81
           P   +   +  SW RS+    L   P ++    + +  L +    R +L MR A   +  
Sbjct: 26  PAGLIAPTVAHSWERSLRAGLLPFSPPAV-ADHLAARHLAQAVERRRELLMR-ARPVMDY 83

Query: 82  LHHRVRHADYCVMLTDAQGQTIDHRVDTSIRNDCRKAGLYLGTCWSEAEEGTCGVATVLT 141
           LH + + +D  V+L D  G  I+   D +      +  L  G  W E   GT  + T L 
Sbjct: 84  LHAQTKGSDSVVILADDNGVLIEALGDAAFVERAERVALKPGASWHERHRGTNAIGTALV 143

Query: 142 SQSAVTVHKRDHFRAAFIGLTCSAAPIFDPQGNLLGVMDASALKSPDDRRSQHLVRQMVA 201
               V VH  +HF      LTC+AAPI  P G +LGV+D S    P   R  H    +V 
Sbjct: 144 EAQPVAVHGGEHFFEHNRFLTCAAAPIAGPDGRVLGVLDISG---PQRGRHPHTFG-LVR 199

Query: 202 QSAQAIENAFFMHSARQHWVLQAHSTPGYVDSQPDLLLAWDQDGRLHALNSKARQALRRR 261
            +   IEN  F       + ++ H     + +  + ++A  ++G +   N  A   L   
Sbjct: 200 AATHMIENKLFEARHEGEYRIRFHPQADGIGTLAEGMVALSEEGLVIGANRAALAFLAIT 259

Query: 262 FGQV---------PEHIGDVFDLDALRAVTHDATQQLPWLGEPGVLHVRVNAPRRKPARA 312
              +         P  + D+ D        H  T         G   +RV    R   R 
Sbjct: 260 PSDIGKALIEALLPLRMADILD----HGHRHPGTTLGLACPGGGRFSLRVEPGWRAVVRP 315

Query: 313 AVIPLVDARVEEHL--------------RLALRVKNRNLPVLVQGETGAGKEVFARQLHE 358
           A +P  D RV++ L                  ++  + +P+L+QGE+G GKEVFA  LH 
Sbjct: 316 AAMPAPD-RVQDALADLDTGDPTMAGAIERVRKILGKPIPLLLQGESGVGKEVFATALHA 374

Query: 359 RSARHTGPFVAVNCAAIPENLIESELFGYVAGAFTGASSKGMPGLLVQADGGTLFLDEIG 418
              R   PFVAVNCAA+PE+LIE+ELFGY  GAFTGA  +G  G + +A+GGTLFLDEIG
Sbjct: 375 TGPRRGRPFVAVNCAALPEHLIEAELFGYAPGAFTGARREGSAGRIREAEGGTLFLDEIG 434

Query: 419 DMPLALQTRLLRVMAEGEVAPLGAAKTRAVDIHVICASHRDLSVLVSEGRFREDLFFRLG 478
           DMPLALQ RLLRV+ + +V PLG  K  +VD  +I ASHR L      GRFR DL++RL 
Sbjct: 435 DMPLALQCRLLRVLQDRQVVPLGGGKAVSVDFALIAASHRPLKAEAEAGRFRADLYYRLN 494

Query: 479 CARFCLPPLRERTDKLALINRLLEQEARNSRVSVGIAPSALQLLLGYAWPGNVRQLRHVL 538
               CLPPLR R D  AL+ R++  E       +G+ P     L G+ WPGN+RQL +VL
Sbjct: 495 GLTLCLPPLRARRDFAALVARMI--ETMEPGAGIGLDPDVADALAGHGWPGNLRQLANVL 552

Query: 539 AYACAVCEGGTVQVA------DLPVEVRGEQVAAPTEDRASPER-QVVLDALIRHR---- 587
            +ACA+ + G +++       DL  E+R       T+  A P   +   D+LI       
Sbjct: 553 RFACALRDPGEIRLGWHHLPEDLIEELRCPS-GVDTDAGAGPATLRAASDSLIERMVAAS 611

Query: 588 -WKPLPTAQALGISRATLYRRVN 609
                  A+ LGISR TLYRR+N
Sbjct: 612 GGNLSEAARRLGISRNTLYRRMN 634



 Score = 29.6 bits (65), Expect = 4e-04
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 522 LLGYAWPGNVRQLRHVLAYACAVCEGGTV---QVADLPVEVRGEQVAAPTEDRASP---E 575
           L GYA        R   A      EGGT+   ++ D+P+ ++   +    + +  P    
Sbjct: 400 LFGYAPGAFTGARREGSAGRIREAEGGTLFLDEIGDMPLALQCRLLRVLQDRQVVPLGGG 459

Query: 576 RQVVLD-ALIRHRWKPLPTAQALGISRATLYRRVNQLGIDMP 616
           + V +D ALI    +PL      G  RA LY R+N L + +P
Sbjct: 460 KAVSVDFALIAASHRPLKAEAEAGRFRADLYYRLNGLTLCLP 501