Pairwise Alignments

Query, 550 a.a., cyclic peptide transporter from Pseudomonas simiae WCS417

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  108 bits (271), Expect = 4e-28
 Identities = 129/569 (22%), Positives = 248/569 (43%), Gaps = 53/569 (9%)

Query: 9   FNGLLALLRPFRTIVTVSVALGMAGGLAITLLLATINNALHSPQGMTQGVILTFAALCVL 68
           F  L   +R ++  + VS    +    A T +++ +   L    G  +   L      +L
Sbjct: 13  FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMIL 72

Query: 69  ALV-----SSIISDIGTNYVGQRIIAALRKDLGEKVLSAPIGQIERYRSHRLIPVLTHDV 123
            L+     S   S    ++V   ++  +R+ L    +  P+   ++  +  L+  +T+D 
Sbjct: 73  GLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDS 132

Query: 124 DTISDF-SFAFTPLAIAATVTLGCLGYLAYLSVPMFLMM-VVAIVIGSAVQFIAGG--KG 179
           + ++   S A   +       +G L  + + S  + L++ VVA V+  A+ F++    K 
Sbjct: 133 EQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKI 192

Query: 180 IQGFDLARSH-----EDELQRYYNAIASGAKELRMHRPRRFRMNTHRIQETADRISDIQV 234
            +    A  H     E  L+ +   ++ G +E+   R R  +++    Q+T   +S   +
Sbjct: 193 SRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVE--RKRFDKVSNSMRQQTMKLVSAQSI 250

Query: 235 RSVNIYILAKTFGSMLFFVVIGLALAMQAYNPNPDPTVITGFVLVLLYMKGPLEHLLGYL 294
               I ++A    S+  F V+ LA ++ +      P   T     +  +  PL+ L    
Sbjct: 251 ADPVIQMIA----SLALFAVLFLA-SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVT 305

Query: 295 PVVGKAKIA----FGRISELSERFSSPEPHLLMDDSEAPTPIVNS-LELRNVSYSPPAVE 349
               +   A    FG +   +ER          D+ +     VN  +++++V+++    +
Sbjct: 306 SEFQRGMAACQTLFGLMDLETER----------DNGKYEAERVNGEVDVKDVTFT---YQ 352

Query: 350 GSEPFHLGPINLNIAQGDIVFIVGENGSGKTTLIKLLLGLYPPQSGEILLNGEAVTDPER 409
           G E   L  ++ +I QG  V +VG +GSGK+T+  L    Y   SG I L+G  V D + 
Sbjct: 353 GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL 412

Query: 410 DDYRQLFTTVFADYYLFDDLV--------QGSAT-QSLDSATKYLERLE-IAHKVSVKDG 459
            + R+ F  V  + +LF+D +        +G  T + ++ A +    +E I +     D 
Sbjct: 413 TNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDT 472

Query: 460 VF--STTDLSTGQRKRLALVNAWLEERPVLVFDEWAADQDPAFRRIFYTELLPDLKRLGK 517
           V   + T LS GQR+R+A+  A L + PVL+ DE  +  D    R     L  D  +  K
Sbjct: 473 VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL--DELQKNK 530

Query: 518 TIIVISHDDRYFDIADQLVRLRAGQVVHK 546
           T++VI+H     + AD+++ +  G+++ +
Sbjct: 531 TVLVIAHRLSTIEQADEILVVDEGEIIER 559