Pairwise Alignments

Query, 811 a.a., ligand-gated channel from Pseudomonas simiae WCS417

Subject, 703 a.a., TonB-dependent siderophore receptor from Pseudomonas stutzeri RCH2

 Score =  200 bits (508), Expect = 3e-55
 Identities = 178/675 (26%), Positives = 292/675 (43%), Gaps = 54/675 (8%)

Query: 151 TATRLTLTPRETPQSITVITRQHIEDFGLNNVDDVMRHTPGITVSAYDTDRTNY-YS-RG 208
           +AT+      E PQSI+VI    ++D      +  +    G+         T Y YS RG
Sbjct: 59  SATKTDTPIEEIPQSISVIPASVLQDLDSPRAEKALDFAGGVARQNDFGGLTMYEYSVRG 118

Query: 209 FSVNSFQYDGIPSTVRNVGYSAGNTLSDMAIYDRVEVLKGATGLLNGAGSLGATINLIRK 268
            +   F  DG      N G+      S++   +RVEVLKG +  L G G  G TIN++ K
Sbjct: 119 LTTGEFYKDGFSV---NRGFMNPPDASNI---ERVEVLKGPSASLYGRGDPGGTINIVSK 172

Query: 269 KPTSEFKGHVQLGAGSWDNYRSEVDVSGPLTDSGNVRGRAVAAYQDKKSFMDHYSRKTET 328
           +P  +    + L AG WD YR+ +DV+ PL + GN+  R   A +D  SF DH   + + 
Sbjct: 173 RPQLDSFARLDLSAGRWDRYRTALDVNTPLDEDGNMLYRMNIAVEDGNSFRDHREAERQF 232

Query: 329 YYGITEFDLSPDTMLTVGFDYQDNIPKGSSWSGSFPLVNSNGSINKMPRSYNNGTTWSSW 388
                 ++LSPDT L V  +   N       +    +V   G + K+ RS   G      
Sbjct: 233 VAPSFSWELSPDTRLLVQAEVVRN-----RQTFDRGVVAPGGDLGKVSRSAFYGEPSDGP 287

Query: 389 EQN-TRTAFAMLEHDMGDGWVTKFQLDHK---INSYHADLGSIQFVQPAADGTAEINGQK 444
             N   T  A LEHD+ + W  +    +K   ++ Y  +  ++         T  +  + 
Sbjct: 288 ISNDNETLQAELEHDLNEVWTLRLASHYKQGRMDGYATEAAAV--ADDDRTLTRNLRYRD 345

Query: 445 YTGETKSTSADLYATGPFSLFGREHELVVGGSIGTSRWQGKGYWSPEWPGGNKVDFYNWN 504
           Y  +   T  +L   G F     EH+L++G      R+    +          +D YN  
Sbjct: 346 YDWQDAITQLEL--RGRFDTGSIEHQLLIGTEY--ERYALSEFMLRS-NNLRNIDLYNPV 400

Query: 505 GHIAKPIYGPVQQY-IDDTIRQTGYYMTTRLNVMDDLHVILGGRVANY------HVTGIN 557
               +P + P +    ++ +      +  ++   D L  ++G R  +Y       V G  
Sbjct: 401 YGAPRPAFNPARTVDRNELVHSRALNLQDQIRFTDKLFGVIGARYDHYEQRLDNEVAG-R 459

Query: 558 PSYKETGRFVPYAGVVYDLNDNISAYASYTDIFQPQESTYKDRNQKLLEPDEGQNYELGL 617
            + +   +  P  GV+Y L   +  +A+ +  F+P      D +    +P+EG  YE G+
Sbjct: 460 RTEQTHEKVTPRVGVLYQLVPEVGLFANASQSFKPNNGA--DFSGATFDPEEGVGYEAGV 517

Query: 618 KGDFLDGRLNASVAYFEVHETNRAISDDAYNNQTPAPSNYAFKGSKAVTKGYEAEVSGEL 677
           K D  DGRL  + A F + + N   SD       PA   +     +  ++G + +++G+L
Sbjct: 518 KLDLFDGRLGLTAAAFHLTKENVLTSD-------PANDGFQIAAGEVRSRGIDLQLAGQL 570

Query: 678 SPGWQVQGGYTH---KIVRDDNDKKISTF--EPEHQVNLNTTYK-LKGDLDQFTIGGGLR 731
           +   +V GGY +   ++ RD+     S     P H  +L TTY+ L GDL   ++GG + 
Sbjct: 571 TDAIRVIGGYAYVDAEVTRDNTLASGSRLLNVPRHSGSLLTTYEFLDGDLSGLSLGGAVN 630

Query: 732 WQSKGWYEIYNSPLNTNQDITQKAYWLVDLMTRYQVTKNLSATVNFNNIFDKSYYTNVGF 791
           +       + +     + D    +Y  VDL+ RY+ T+ L+  +N NN FD++YY     
Sbjct: 631 Y-------VGDRAGQADSDFELPSYTTVDLLARYKATEKLTLGMNLNNAFDRTYYERSYS 683

Query: 792 YNSAAYGEPRNVMFS 806
                 GEPRN+  S
Sbjct: 684 NVWVMPGEPRNLSVS 698