Pairwise Alignments

Query, 811 a.a., ligand-gated channel from Pseudomonas simiae WCS417

Subject, 737 a.a., TonB-dependent siderophore receptor (RefSeq) from Shewanella sp. ANA-3

 Score =  410 bits (1054), Expect = e-118
 Identities = 251/689 (36%), Positives = 362/689 (52%), Gaps = 20/689 (2%)

Query: 132 NVLGNITEGSGSYTPGTIATATRLTLTPRETPQSITVITRQHIEDFGLNNVDDVMRHTPG 191
           NV+G        Y    + TAT L L+  ETPQS+T +T Q + D  LN+V D M    G
Sbjct: 60  NVVGAKDLHDNRYKTQAMNTATGLDLSYLETPQSVTSVTSQMMHDQQLNSVIDAMTSVAG 119

Query: 192 ITVSAYDTDRTNYYSRGFSVNSFQYDGIPSTVRNVGYSAGNTLSDMAIYDRVEVLKGATG 251
           I     D DR +  SRG +V S  YDG+P+T  +  ++ G+ L D AIY+RVE+++GATG
Sbjct: 120 INARPMDNDRYSISSRGIAVTSILYDGVPTTY-DTRFNYGDNLIDTAIYERVEIVRGATG 178

Query: 252 LLNGAGSLGATINLIRKKPTSEFKGHVQLGAGSWDNYRSEVDVSGPLTDSGNVRGRAVAA 311
           L+ GAG+  A INLIRK+PT EF G   +  GSW+N R  VD+S  L DSG++RGR VAA
Sbjct: 179 LMTGAGNPSAAINLIRKRPTQEFMGSTSVSVGSWNNLRGMVDLSSGLNDSGSIRGRVVAA 238

Query: 312 YQDKKSFMDHYSRKTETYYGITEFDLSPDTMLTVGFDYQDNIPKGSSWSGSFPLVNSNGS 371
           YQDK+SF D Y ++  T YGI E D++  T+LT+G DYQD  P+G + SG  PL +S+GS
Sbjct: 239 YQDKESFQDRYEQQRTTLYGIVEADITASTLLTLGVDYQDTTPEG-TMSGGLPLFHSDGS 297

Query: 372 INKMPRSYNNGTTWSSWEQNTRTAFAMLEHDMGDGWVTKFQLDHKINSYHAD-LGSIQFV 430
                R+ +    W+S        FA LEH   +GW  K    +  NS   D L +  + 
Sbjct: 298 RTNYDRATSTAPDWASAHTQGLNTFASLEHRFDNGWELKGTYSYGDNSLKYDVLWATGYP 357

Query: 431 QPAADGTAEINGQKYT-GETKSTSADLYATGPFSLFGREHELVVGGSIGTSRWQGKGYWS 489
            P  +  A      Y  G     + DL A G F+LFG+EH+L  G + G  +     Y+ 
Sbjct: 358 DPVTNIGATAGSIAYVDGSRTQHNLDLRAQGMFALFGQEHQLTFGWT-GQRQEFANPYYY 416

Query: 490 PEWPGGNKVDFYNWNGHIAKPIYGPVQQYIDDTI---RQTGYYMTTRLNVMDDLHVILGG 546
           P        DF + N    KP +   + +   T     Q+  Y+ T+LN+ D L ++ G 
Sbjct: 417 PTAAVPPLGDFRDPNFQYPKPQW--KETHTTGTFGETEQSAAYVATKLNLTDALALLAGL 474

Query: 547 RVANYHVT----GINPSYKETGRFVPYAGVVYDLNDNISAYASYTDIFQPQESTYKDRNQ 602
           R+  +       G    +K       Y G+ Y L +  S YASYTDIF PQ  T +  + 
Sbjct: 475 RLNKWQTDQDNFGSMYDFKVDNELTTYFGLTYALGEQYSLYASYTDIFAPQ--TLQRIDA 532

Query: 603 KLLEPDEGQNYELGLKGDFLDGRLNASVAYFEVHETNRAISDDAYNNQTPAPSNYAFKGS 662
             ++P +G+NYE G+K   +D  L+ S++ FE+ + N           T  P       +
Sbjct: 533 SYIDPVKGKNYEAGIKASLMDESLDMSLSVFEIRQDNVGERTGDVLPGTTIPVYREVNST 592

Query: 663 KAVTKGYEAEVSGELSPGWQVQGGYTHKIVRDDNDKKISTFEPEHQVNLNTTYKLKGDLD 722
           K  T+G+E E +G+++  W +  GYT     D    +I+T  P  Q+ L TTY   GD +
Sbjct: 593 K--TQGFEFESTGKITDDWNIYFGYTQFSTDDPKGNRINTTSPRQQLKLFTTYTFSGDWN 650

Query: 723 QFTIGGGLRWQSKGWYEIYNSPLNTNQDITQKAYWLVDLMTRYQVTKNLSATVNFNNIFD 782
           +  +G G+ WQS+  Y+  NSPL    ++ Q +Y L  LM  Y  T+ L  + N +N  D
Sbjct: 651 KLQLGAGVNWQSR-VYQTVNSPLG-RVEVEQDSYALASLMASYAFTEQLKLSANVHNALD 708

Query: 783 KSYYTNVGFYNSAAYGEPRNVMFSTRWDF 811
           K+YY+ VG Y+   YG PR++  +  + F
Sbjct: 709 KTYYSQVGQYSQFQYGAPRSMSVNLDYRF 737