Pairwise Alignments

Query, 451 a.a., multidrug transporter MATE from Pseudomonas simiae WCS417

Subject, 452 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  122 bits (305), Expect = 3e-32
 Identities = 108/432 (25%), Positives = 193/432 (44%), Gaps = 16/432 (3%)

Query: 5   LQRPLWQIYLIFLAPMVLSNFLQSFSGTLNGIYVGQMLGTQALAAVSGMFPIVFFFIALV 64
           L  P+ ++ L    P ++   +     +L   +    LGT+ALAA+S  FP+     ++ 
Sbjct: 8   LSAPIGRVLLNMSLPNLIG-IMTILGFSLADTFFISQLGTEALAAISFTFPVTLIISSIA 66

Query: 65  IGLGAGASVLIGQAWGAQETAMVKAITGATLTLGALVGVVAAVLGSLFARPALQALGTPV 124
           IG+GAG S  +G+  G+      K      L L  ++    + LGS+F  P    LG   
Sbjct: 67  IGVGAGVSTNLGRLIGSGNAPQAKVFLHDALLLTFILIASLSALGSIFIEPLFSLLGANE 126

Query: 125 DVLDDAVGYAQKMMLIMPLLLVFILYTQLLRGVSDTISPLLALMVSTLVGLLLTPALIRG 184
             L     Y     +  PLL++ ++  Q LR   DT SP + + ++ ++ L+L P LI G
Sbjct: 127 TSLPLIHDYMMYWYVGAPLLVLLMVGNQGLRSTGDTRSPAMIMTLAAIINLILDPLLIFG 186

Query: 185 WVGLPPMGIQSA----VYAGLVGNALAMLFLILRLRHKNHVMAPDRELLAALRLDRVIL- 239
               P + IQ A    +++ LV  +L+   LI++ R             AA  +DR+   
Sbjct: 187 IGPFPRLEIQGAAIATLFSWLVALSLSGYLLIIKHRMLER---------AAFDIDRMRAN 237

Query: 240 -GKVLRIGLPTGLQMVVLSLSELVILALVNGHGSQATAAYGAVTQIVNYVQFPALSIAIT 298
             K+  I  P  L  ++  L+  VI+A++      A AA+GA T++ + +    ++++ +
Sbjct: 238 WSKLAHIAQPAALMNLINPLANAVIMAMLAHIDHSAVAAFGAGTRLESVLLIVVMALSSS 297

Query: 299 ASILGAQAIGAGRLERIGPILRTGLLINTCLTGGLIVLGYVLSHWLLGLFITDDAARVNA 358
                AQ +GAG+ +R    L   L         L +     +  L  LF TD       
Sbjct: 298 LMPFIAQNLGAGQPQRAKQALLLSLKFILVFQTLLYIPLAFFAQPLASLFSTDPQVLEWL 357

Query: 359 EHLLHIMLWSILVFGFQAVIGGIMRASGVVLMPVVISIFCVLCVELPMAYLLNAHFGLEG 418
              + ++  +    G   +    + A    +  +VI++  ++ + LP+A L +   G++G
Sbjct: 358 SFYILVLPCAYGPLGIVIIFATALNAYHRPMSSLVINLCRLVLLMLPLAALGSYIDGVKG 417

Query: 419 VWMAFPVTYLAM 430
           + +A P+T L M
Sbjct: 418 LLLALPITNLLM 429