Pairwise Alignments

Query, 546 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  196 bits (498), Expect = 2e-54
 Identities = 132/337 (39%), Positives = 197/337 (58%), Gaps = 13/337 (3%)

Query: 196 VLASAVAIILSVLVSLLIIRKVKATLGAEPEEVAEAIRRLADGE--LNQRIETRYPDSVM 253
           ++ + +A+++SV V L I+R +   L    + + +AI+ +A GE  L QR+ T   D   
Sbjct: 274 LIFTVIALVISVFVLLFIVRVLMKPL----DTLNDAIQNVASGEGDLTQRLSTN-TDEEF 328

Query: 254 GILKNALARLSDTISE--VRS---AAQALRHSSVTLLSVASDNRQQINLQTSEAQHVAAA 308
             L       ++T+ +  ++S    A+ LR S  T +++   + + +  Q  E + +A A
Sbjct: 329 AKLAIGFNTFTETLQKQLIQSKAIGAEILRGSESTSMTL-QQSAEAMRSQLHELEQLATA 387

Query: 309 ITQMAASVSEVSGYASAASKATILADAEVDSGHRLVGEVTVSIEELATILDHATLRVNQV 368
           + +MA + S+V+  A  A+ A  +AD    +G  +V + T +I+ L+  +D A   V  +
Sbjct: 388 MHEMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVDDVKVL 447

Query: 369 SSDSENIETVIEVINAIAAQTNLLALNAAIEAARAGEHGRGFAVVADEVRSLATRTQEST 428
            S + NIETV++VIN IA QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ+ST
Sbjct: 448 ESATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQST 507

Query: 429 QEIRDMIGKLQSGTQDAADIMQRSRSLAQTTVTQTRDSQLALGKISQEVGAINAMNAQIA 488
            EIR+MI KLQSG    A  M  S+  A + V Q + +  AL KI   +  I+ MN QIA
Sbjct: 508 TEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIA 567

Query: 489 SVSVQQSAAAEEVAQNVTRIHSSTVQSAAGSEQVENS 525
           S + +QS  AEE+  N  +I   + Q A  +++   S
Sbjct: 568 SAAEEQSLVAEEINNNTVKIKDLSDQVAESADEANMS 604