Pairwise Alignments

Query, 1127 a.a., ATPase from Pseudomonas simiae WCS417

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  199 bits (506), Expect = 2e-54
 Identities = 135/450 (30%), Positives = 232/450 (51%), Gaps = 23/450 (5%)

Query: 628  WVVLTRESRGVAQEESDRQTLLLMQEIDAHSLTDQALQQAKEASEAANAAKSRYVTGLSH 687
            W+ +   +   +Q + +   + ++   +   L+D+ L  AK+ ++AA+ AK  ++  +SH
Sbjct: 991  WMTVNVSTLLDSQNQFESAVVSMVDMTELKLLSDELLV-AKDEADAASKAKGDFLANMSH 1049

Query: 688  ELRTPLNSILGFTQILQRDSAMPEQHQDALATILRSGSHLVSLIDGLLDVAKIEAGKLRL 747
            E+RTP+N+I+G +Q+  + + + ++ ++ L  I R+   L+S+I+ +LD +KIEAGKL +
Sbjct: 1050 EIRTPMNAIIGMSQLCLQ-TQLDKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDI 1108

Query: 748  ELTEIPFPELLHDLEQMFTPQAHDKGLRFRLDCVGKIPAVVRGDEKRVRQILINLLGNAV 807
            E        +L DL  MF+ +A  K +         +P  + GD  R+ Q+LINL+ NA+
Sbjct: 1109 ENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAI 1168

Query: 808  NFTDSGEVRLRVSYMRE-----TANFEIIDTGIGIDPGQLERIFQPFERGD--LMRQDNG 860
             FT+ GEV L +S + +        F + D+GIG+   Q  ++F+ F + D    R+  G
Sbjct: 1169 KFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGG 1228

Query: 861  VGLGLTITRMLTALMGGELRVTSELDKGTC--FQVRLFLSQVRAPQAVVHVEHDIIGYQG 918
             GLGL I++ L  LMGG + V S+L  G+   F V+L +S           +   +G + 
Sbjct: 1229 TGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCISS---------GQKLFVGQEL 1279

Query: 919  ERRRILVVDDHVDHRKVLSGMLTPLGFEVIQASNGQDAIRQVALLAPDLILMDLSMPTLD 978
            +   ILV DD+   R ++   L  +GF V    +G +AI + +     + L+D  MP LD
Sbjct: 1280 DGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLD 1339

Query: 979  GYETSRLIRRNALCTAPIIVISANAFTDDRERSIAAACNDYLAKPVRTPELLGRLQQHLD 1038
            G ET++ I++       I+++SA+A  D   +        Y++KP+    LL  +   L 
Sbjct: 1340 GIETAKQIKQQTKNAPRILMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDGIMNALG 1399

Query: 1039 LHWL---RRTQRSIPPPPPRVLPGAEDLAV 1065
               +   RR Q +I P     L G   L V
Sbjct: 1400 RSGILPVRRHQDNIAPELLLPLKGKRILLV 1429



 Score = 80.9 bits (198), Expect = 8e-19
 Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 1/118 (0%)

Query: 921  RRILVVDDHVDHRKVLSGMLTPLGFEVIQASNGQDAIRQVALLAPDLILMDLSMPTLDGY 980
            +RIL+V+D+  + +V +  L  +G  +  A+NGQ A+ ++A  + DL+LMD  MP +DGY
Sbjct: 1424 KRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGY 1483

Query: 981  ETSRLIR-RNALCTAPIIVISANAFTDDRERSIAAACNDYLAKPVRTPELLGRLQQHL 1037
            + ++ IR R  L   P+I ++ANA   D+E  + A  ND++AKP+    L   L ++L
Sbjct: 1484 QATKAIRQRPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYL 1541