Pairwise Alignments

Query, 281 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 286 a.a., spermidine/putrescine ABC transporter permease PotB from Vibrio cholerae E7946 ATCC 55056

 Score =  164 bits (416), Expect = 2e-45
 Identities = 87/260 (33%), Positives = 159/260 (61%), Gaps = 7/260 (2%)

Query: 12  LVLFAGLLILPLGLTLVLSFNVFDYQVGVKADEWTFAHYLSLLSDSYFYEIFWRTFWISA 71
           LVLF   +++P  + +  SF   D    +K   +TF +Y  LL D  + ++   +F+++ 
Sbjct: 20  LVLF---VLIPNLMIIGTSFLTRDEANLIKF-AFTFENYTRLL-DPLYGKVMLHSFYMAI 74

Query: 72  LVTLLCVLIGVPEAYILSRMGTPWRSIFLILILTPLLISVVVRAFGWSLLLGADGLVNQV 131
           + TL+C++IG P AYI+++M   WR   L LI+ P   + ++R +G  ++LG  G++NQ 
Sbjct: 75  VATLICLVIGYPFAYIVAKMPEKWRPFMLFLIIVPFWTNSLIRTYGLKIVLGTQGILNQA 134

Query: 132 IQFLG--GRPVKLLYTPFAVIIALVHVMLPFMIIPVWTSLQKLDPSAEQAALSLGASQAT 189
           +  LG    P+++++T  AV+I LV+++LPFMI+P++++++KLD +  +AA  LGA++  
Sbjct: 135 LMSLGLIDAPLRIMFTETAVMIGLVYILLPFMILPLYSAIEKLDGTYIEAARDLGANKFQ 194

Query: 190 VMRKIVLPQVMPGVLSGTLIVFGLAASSFAIPGLLGGRRLKMVATVVYDQYLSELNWPMG 249
            + +++LP  MPG++ G L+V   A   F I  LLGG +  ++  V+  Q L+  +WP G
Sbjct: 195 TLVRVILPLTMPGIIGGCLLVLLPALGMFYIADLLGGAKNLLIGNVIKSQVLNARDWPFG 254

Query: 250 ATIAVVLLLVNLLIMLSWNR 269
           A  ++ L L   +++ ++ R
Sbjct: 255 AATSIALTLAMAIMLYAYYR 274