Pairwise Alignments

Query, 403 a.a., general secretion pathway protein GspF from Pseudomonas simiae WCS417

Subject, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

 Score =  287 bits (734), Expect = 4e-82
 Identities = 167/406 (41%), Positives = 236/406 (58%), Gaps = 4/406 (0%)

Query: 1   MNRYRYEAADANGNVEAGHVEADSQSAAFANLRSRGLTALLVQIEGNQQAAAGSS---LF 57
           M  + Y+A DA G  + G +E D+       L+ + L  + V +E   +AA   S    F
Sbjct: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEV-VETQVKAARSRSQGFAF 59

Query: 58  TAKLSDNDLAWATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLSAVRADVRGGMRLA 117
              +S  DLA  TRQLA+L+ + +PLE  L A  EQ+EK  I   L AVRA V  G  L+
Sbjct: 60  KRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLS 119

Query: 118 DALAARPRDFPSIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177
           D+L   P  F  ++R+++AAGE+SG L  V+ERLADY E R  +R K+  A IYP V+ +
Sbjct: 120 DSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVV 179

Query: 178 VSIGIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFVRAWGGLCFAGMVGGFWSW 237
            ++GIV FLL+ VVP++V  F Q  Q LP  T  +L+ASDF++ WG     G++   +  
Sbjct: 180 FAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLV 239

Query: 238 RLYLRNPVARLSWHSRVLRLPLIGRFVLGLNTARFASTLAILGGAGVPLLRALEAARQTL 297
           R  L  P  RL W  RV+ LP+IG+   GLNTARFA TL+I   + +P+L  +  A   +
Sbjct: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299

Query: 298 SNDRLSQCVNDATAKVREGVNLAPALAVEKVFPPVLIHLIASGEKTGALPPMLERAAQTL 357
           +N  + Q V  A   VREG +L  AL   K+FPP+++H+IASGE++G L  ML RAA   
Sbjct: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359

Query: 358 SRDIERRAMGMTALLEPLMIVVMGAVVLVIVMAVLLPIIEINQLVT 403
               E        +  P +I +M  +VL IVMA L+PI+E+N L++
Sbjct: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405