Pairwise Alignments

Query, 472 a.a., general secretion pathway protein GspE from Pseudomonas simiae WCS417

Subject, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

 Score =  340 bits (871), Expect = 9e-98
 Identities = 210/470 (44%), Positives = 279/470 (59%), Gaps = 25/470 (5%)

Query: 21  QGMLLTVCPSTPGWSISEVHRQFG---QTHLEQVRDDELDGLLTSAYADTGSAAAVVGAA 77
           QG LL +  S P    +E   +F    Q  L       L   +   Y  +   AA  G  
Sbjct: 93  QGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQAAIRRLYGRSIQGAANQGKE 152

Query: 78  ENEVDLDRLMQ----DMPEITDLLDTQDGAPVIRMINALLTQAARDEASDIHIEPYETHS 133
            ++ +L  L++    ++  I DL  +QD +PV R IN +L  A R  ASDIH EPYE   
Sbjct: 153 ISQDELANLVKVSDDELQSIEDL--SQDDSPVSRFINQVLLDAVRKGASDIHFEPYENQY 210

Query: 134 VVRYRVDGTLRDVVSPRKALHGALVSRIKIMAQLDIAEKRLPQDGRIALRVA-GRPIDIR 192
            +R R DG L +   P   L   L +RIKI+++LDIAE+RLPQDGRI LR++    ID+R
Sbjct: 211 RIRLRCDGILVETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRIKLRLSRDTAIDMR 270

Query: 193 VSTVPTGHGERVVMRLLDKQAGRLQLETLGMAPQLLARLDTLIRQPHGIVLVTGPTGSGK 252
           VST+PT  GE++V+RLLD  A  L ++ LG  PQ        +++P G++L+TGPTGSGK
Sbjct: 271 VSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMILMTGPTGSGK 330

Query: 253 TTSLYAALARLDASTSNILTVEDPVEYDLPGISQIQVNAKIDMTFGLALRAILRQDPDII 312
           T SLY  L  L+ S  NI T EDPVE +L GI+Q+QV  KI   F  ALR+ LRQDPD++
Sbjct: 331 TVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSFLRQDPDVV 390

Query: 313 MIGEIRDLETAQIAVQASLTGHLVLATLHTNDAVSAVNRLIDMGVEPFLLASSLLGVLAQ 372
           M+GEIRDLETA+IAV+A+ TGHLVL+TLHTN A   V RL +MGVEPF LASSL  ++AQ
Sbjct: 391 MVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLASSLSLIIAQ 450

Query: 373 RLVRRLCPHCK-QEDPSA----PGTWRP---------VGCAQCNQIGYSGRTGIHELFCV 418
           RL RRLC HCK    PSA       ++P          GC +C   GYSGR GI+E+   
Sbjct: 451 RLARRLCKHCKIAVRPSALLQSQFAFQPNEILYEANAAGCNECTG-GYSGRVGIYEVMAF 509

Query: 419 DDDVRSLIHQGANEQDLRLAARRAGMFSMREDGERWVHSGATAPEEILRV 468
           + ++   I Q A+   +   A+  GM +++E G   +  G T+  E+ RV
Sbjct: 510 NTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITSFAELQRV 559