Pairwise Alignments

Query, 764 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

Subject, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

 Score =  291 bits (745), Expect = 8e-83
 Identities = 223/688 (32%), Positives = 326/688 (47%), Gaps = 103/688 (14%)

Query: 93  NFVDADIQAVVRALSRATGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAALRMQGFSV 152
           +F   DIQ  +  + R   +  +VDP V+G + + S   +   Q Y   L+ L + GF+V
Sbjct: 30  SFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFAV 89

Query: 153 VDV-GGVAQVVPEADAKLLGGPIYT----AGSSGMQTRTFRLQYENAVNLIPVLRPIVSP 207
           V++  GV +V+   DAK    P+ +    A    + T+   ++  +   L P+LR ++  
Sbjct: 90  VEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLIDN 149

Query: 208 NNPINA--YPGNNSIVITDYAENLARVAQIINGIDTPSAIDTDVVRVQNGIAVDIAAMVS 265
               N   Y   N I+IT  A  + R+A+II  +D     + +VV + N  A ++  +V 
Sbjct: 150 AGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVE 209

Query: 266 ELLETQGADQTQ---KINVIGDPRSNSIIIRSGSPERTELARNLIYKLDNAQSNPSNMHV 322
            L +T  A  T    K   + D R+NSI+I SG P+  E  + LI +LD   +   N  V
Sbjct: 210 ALNKTTDAQNTPEFLKPKFVADERTNSILI-SGDPKVRERLKRLIKQLDVEMAAKGNNRV 268

Query: 323 VYLRNAQAGKLAQSLRGLLTGESDSGVSDDARGKLSAMGGNGKNTEGTSNAQNSSGTPTG 382
           VYL+ A+A  L + L+G+                             + N Q   GT   
Sbjct: 269 VYLKYAKAEDLVEVLKGV-----------------------------SENLQAEKGT--- 296

Query: 383 SGVQSGYGQSTGSTTGTSGTSQDQDTSFSAGGVTIQADATTNTLLISAPDPLYRNLREVI 442
                                  Q T+     V I A A TN+L+++AP  +   + EVI
Sbjct: 297 ----------------------GQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVI 334

Query: 443 DMLDQRRAQVVIESLIVEVGEDDATEFGVQW---------QAGNLGGKGGFGGVNLGGSG 493
             LD RRAQV+IE+LIVE+ E D    GVQW         Q GN G     G V +G   
Sbjct: 335 GQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGAS--IGNVMIGLEE 392

Query: 494 VNSTPTSKTSIDV----------LPKGLNVGLVDGTVDIPGIGKVL---DLKVLARALKS 540
              T  +K   D             KG    L      I G    +   D   L  A+ +
Sbjct: 393 AKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSN 452

Query: 541 KGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLN 600
              +N+LS+P++  +DN  AS  VG+ +P +TGS     G  ++NPFQTV R+EVG+KL 
Sbjct: 453 DSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTA---GSNNDNPFQTVDRKEVGIKLK 509

Query: 601 VRPQISEGGTVKLDIYQEVSTVDERASVTAGTVTNKRAIDTSILLDDGQIMVLGGLLQDG 660
           V PQI+EG +V+L+I QEVS V   A+        KR ++TS+++ DGQ++VLGGL+ + 
Sbjct: 510 VVPQINEGNSVQLNIEQEVSNV-LGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDER 568

Query: 661 YSQSNDAVPWLSDIPGLGALFRNEKRSVSKTNLMVFLRPYIIRDSGAGRSITLNRYEFMR 720
             +S   VP L DIP LG LFR+    V K NLMVF++P IIRD      IT  +Y ++R
Sbjct: 569 ALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIR 628

Query: 721 -----RAQGGLQPEHSWAMPDVQAPQLP 743
                RA+ GL+      + D   P LP
Sbjct: 629 AEQLFRAEKGLR-----LLDDASVPVLP 651