Pairwise Alignments

Query, 764 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

Subject, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

 Score =  119 bits (299), Expect = 3e-31
 Identities = 93/300 (31%), Positives = 148/300 (49%), Gaps = 28/300 (9%)

Query: 416 TIQADATTNTLLISAPDPLYRNLREVIDMLDQRRAQVVIESLIVEVGEDDATEFGVQWQA 475
           +I  D  TN+LLI         +RE+I+ LD    QV IE+ IV V E +  E GV+W  
Sbjct: 292 SISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEELGVRWGV 351

Query: 476 GNLGGKGGFGGV---NLGGSGV---NSTPTSK-TSIDVLPKGLNVGLVDGTVDIPGIGKV 528
            +  G    GG    NL   G+   +  P  +  ++++     N   +   V   G G +
Sbjct: 352 MSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVAKLGSGTL 411

Query: 529 LDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQ 588
           LDL++   AL+++    ++S+P L+T + + A I  G  IP++  S      G S     
Sbjct: 412 LDLEL--SALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESS----SSGAS----- 460

Query: 589 TVQREEVGLKLNVRPQISEGGTVKLDIYQEVSTVDERASVTAGTVTNK------RAIDTS 642
           TV  ++  L L V PQI+    + LD+    S   +R   T  T T +      + I T 
Sbjct: 461 TVAFKKAVLSLKVTPQITPDNRLVLDL----SVTQDRRGETVKTGTGEAVSIDTQRIGTQ 516

Query: 643 ILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLGALFRNEKRSVSKTNLMVFLRPYII 702
           +L+++G+ +VLGG+ Q   + S D VP L D+P LGALFR     + K+ L++F+ P ++
Sbjct: 517 VLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576



 Score = 45.4 bits (106), Expect = 8e-09
 Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 17/179 (9%)

Query: 90  VQLNFVDADIQAVVRALSRATGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAALRMQG 149
           + +NF D  ++ V++ ++   G   +V   V GNLTL  +G VP  Q  D++   L+++G
Sbjct: 166 ISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDG-VPWQQVLDII---LQVKG 221

Query: 150 FSVVDVGGVAQVVPEADAKL-----LGGPIYTAGSSGMQTRTFRLQYENAVNLIPVLR-- 202
                 G V  + P+ +  L     L           +++   ++ +  A ++  ++   
Sbjct: 222 LDKRVDGNVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGE 281

Query: 203 ---PIVSPNNPINAYPGNNSIVITDYAENLARVAQIINGIDTP---SAIDTDVVRVQNG 255
               ++S    I+     NS++I +  +N+A + +II  +D P     I+  +V V+ G
Sbjct: 282 GNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEG 340