Pairwise Alignments

Query, 764 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

Subject, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

 Score =  108 bits (269), Expect = 1e-27
 Identities = 95/384 (24%), Positives = 159/384 (41%), Gaps = 29/384 (7%)

Query: 342 TGESDSGVSDDARGKLSAMGGNGKNTEGTSNAQNSSGTPTGSGVQSGYGQSTGSTTGTSG 401
           TG S + ++            N  ++  +S + NSS   + S   S    + G T   + 
Sbjct: 158 TGRSLTSITTGTITNTDTNNSNSSSSSSSSISSNSSSDGSSSNSNSNRSDARGGTEIETT 217

Query: 402 TSQD---------QDTSFSAGGVTIQADATTNTLLISAPDPLYRNLREVIDMLDQR-RAQ 451
              D               +GG T+  +     L + A     R + E + +  QR   Q
Sbjct: 218 NESDFWPLLEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHRQ 277

Query: 452 VVIESLIVEVGEDDATEFGVQWQAGNLGGKGGFGGVNLGGSGVNSTPTSKTSIDVLPKGL 511
           V++E+ I+EV   D  + G+ W          +    +G   +           VLP GL
Sbjct: 278 VILEAKILEVTLSDGYQQGINWSKAFSSNGANY---KIGSGSITQDSNGNPITSVLP-GL 333

Query: 512 NV--GLVDGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIP 569
           +    L+ G  ++       D  +   A  ++G  NVLS+P +   +N+ A I VG    
Sbjct: 334 DAIGNLLGGQSNVVISSGSFDAVISFMA--TQGDLNVLSSPRVTASNNQKAVIKVGTDEY 391

Query: 570 FVT--GSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVSTVDERAS 627
           +VT   S V  G     +P  T+     G+ L+V PQI + G V L ++  V  V+++  
Sbjct: 392 YVTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTK 451

Query: 628 VTAGTV---------TNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLG 678
                          ++ R  D+ I   DG ++V+GGL++         VP+L D+P LG
Sbjct: 452 KILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALG 511

Query: 679 ALFRNEKRSVSKTNLMVFLRPYII 702
            LFRN  +   KT L++ L+P ++
Sbjct: 512 HLFRNTTKLTQKTELVILLKPTVV 535