Pairwise Alignments

Query, 666 a.a., choline transporter from Pseudomonas simiae WCS417

Subject, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  351 bits (901), Expect = e-101
 Identities = 196/499 (39%), Positives = 294/499 (58%), Gaps = 15/499 (3%)

Query: 17  PVFYFAATFILLFGI-TVIAIPQQAGAWLLAAQNWAANTVGWYYMLAMTLYLVFVVVTAL 75
           PVF  +A  I  F + TV+    QA   L   +     +  W ++ +  L+L+F V   +
Sbjct: 38  PVFGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGLVI 97

Query: 76  SGYGKIKLGADHDEPEFSYLSWAGMLFAAGISITLFFFCVSEPLTHLV---QPPQGAPMN 132
           S +GKI+LG    + + S+LSW  MLFAAG+ I L F+ V+EP+ +     + P G   N
Sbjct: 98  SPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVEAN 157

Query: 133 A-DAARQAMQILFLHWGLHGWGVFAFVGMALAYFAYRHNLPLALRSALYPLIGKRINGPI 191
              AA+ AM     HWGLH W ++  V ++LA+F Y   LPL++RS  YPL+G R  G  
Sbjct: 158 TPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWGWA 217

Query: 192 GYAVDGFGIIATVFGLGADMGFGVLHLNSGLDYLFGIAHTQWIQVGLITLMMGAAIIVAV 251
           G+ VD   ++AT+FGL   +G G     SG+ ++FG      +Q+ +I ++ G A +  V
Sbjct: 218 GHVVDILAVLATLFGLATSLGLGAQQAASGIHHVFGFESGIGLQIAVICVVTGLATLSVV 277

Query: 252 AGVDKGVRVMSDINMLLACALLLFVLFAGPTQHLLNTLIQNIGDYLGALPTKSFDVYAYD 311
            G+D GV+V+S+INM++A  LL  V   G +   L ++   +  YL  L   S      D
Sbjct: 278 RGIDGGVKVISNINMIVAFLLLALVAVIGYSV-TLTSIPTTLMAYLQNLIPLSNPHGRED 336

Query: 312 KPSDWLGGWTVFYWAWWIAWSPFVGLFIARISRGRTIREFVFGVLLIPLGFTLAWMSIFG 371
           +   W  GWTVFYWAWWI+WSPFVG+FIAR+S+GRTIREF+  VLLIP   TL WMS+FG
Sbjct: 337 EV--WFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSVFG 394

Query: 372 NSAIDQVLNHGLVALGQSAIDDPSMSLYLLLETYPWSKTVIAVTVFISFVFFVTSADSGT 431
             A+DQV+N  +  LGQ+ + D S++++ + ++  + K +  + V +  VFF+TS+DSG+
Sbjct: 395 GLAVDQVINE-IGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDSGS 453

Query: 432 VVLSTLSSKGGNADEDGPKWLRVFWGAMTALVTSALLFAG---SIDSLKSAVVLTSLPFS 488
           +V+ +++S G     D P   RVFW  +   V  ALL+ G   ++ +L++ V+ T+LPF+
Sbjct: 454 LVIDSITSGG---KLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPFT 510

Query: 489 MILLLMMWGLHKAFYLESQ 507
           +ILLLM   L K    E +
Sbjct: 511 VILLLMCVSLWKGLKTEPE 529