Pairwise Alignments

Query, 666 a.a., choline transporter from Pseudomonas simiae WCS417

Subject, 706 a.a., transporter protein from Sinorhizobium meliloti 1021

 Score =  533 bits (1373), Expect = e-155
 Identities = 272/655 (41%), Positives = 407/655 (62%), Gaps = 20/655 (3%)

Query: 13  RMNAPVFYFAATFILLF-GITVIAIPQQAGAWLLAAQNWAANTVGWYYMLAMTLYLVFVV 71
           ++N PVF  +   I LF GI VIA P++A +     Q    +  GW Y+L++ ++L  ++
Sbjct: 52  KVNLPVFVGSVAVIALFVGIGVIA-PKRAESIFSGMQTAILSGFGWLYLLSVAVFLFSML 110

Query: 72  VTALSGYGKIKLGADHDEPEFSYLSWAGMLFAAGISITLFFFCVSEPLTHLVQPPQGAPM 131
             A S YG++KLG D  EPEF YLSW  MLFAAG+ I L +F V EP+TH   PP+  P+
Sbjct: 111 FLAFSRYGELKLGPDDSEPEFRYLSWIAMLFAAGMGIGLMYFAVGEPMTHFASPPEAEPL 170

Query: 132 NADAARQAMQILFLHWGLHGWGVFAFVGMALAYFAYRHNLPLALRSALYPLIGKRINGPI 191
              A R+AM + F HWG+H W +++ VG++LAYF YR+NLPL +RS LYPL+ + I+GPI
Sbjct: 171 TIAAQREAMSVTFFHWGVHAWAIYSVVGLSLAYFGYRYNLPLTVRSGLYPLLKEGIHGPI 230

Query: 192 GYAVDGFGIIATVFGLGADMGFGVLHLNSGLDYLFGIAHTQWIQVGLITLMMGAAIIVAV 251
           G+ VD F I  T+FGL   +GFG+L +NSGL+YL GI  + ++Q+ L+T++   A I  V
Sbjct: 231 GHVVDIFAICGTMFGLATSLGFGILQINSGLNYLLGIPQSIYVQLLLVTVVTAIATISVV 290

Query: 252 AGVDKGVRVMSDINMLLACALLLFVLFAGPTQHLLNTLIQNIGDYLGALPTKSFDVYAYD 311
            GV+KGVR++S+ N+ LA  L+LFVL  GPT  L+   +QNIG YL +L  ++F++YAY+
Sbjct: 291 TGVEKGVRILSETNLFLAVLLMLFVLVVGPTGTLMRDFVQNIGLYLDSLVLRTFNIYAYE 350

Query: 312 KPSDWLGGWTVFYWAWWIAWSPFVGLFIARISRGRTIREFVFGVLLIPLGFTLAWMSIFG 371
            P  W+  WT+FYWAWWI+WSPFVG+FIARISRGRT+REFV  VL +P  FT  WM++FG
Sbjct: 351 -PRPWIDSWTLFYWAWWISWSPFVGMFIARISRGRTVREFVTAVLFVPAMFTFLWMTVFG 409

Query: 372 NSAI--DQVLNHGLVALGQSAIDDPSMSLYLLLETYPWSKTVIAVTVFISFVFFVTSADS 429
           N+AI  D  + +G +A    A  D S++L+   E  PW      + V +  +FFVTS+DS
Sbjct: 410 NTAIYVDTTIANGELARDVKA--DLSVALFQFFEYLPWPAVTSTLAVLLVSIFFVTSSDS 467

Query: 430 GTVVLSTLSSKGGNADEDGPKWLRVFWGAMTALVTSALLFAGSIDSLKSAVVLTSLPFSM 489
           G++V+ T++S G  A    P   R+FW +++ +V + LL  G + +L+SA + T+LPFS+
Sbjct: 468 GSLVIDTIASGGETAT---PALQRIFWCSLSGIVAAVLLSTGGLTALQSATISTALPFSL 524

Query: 490 ILLLMMWGLHKAFYLESQKQIAQLHSLAPVSAARKGRGG--WRQRLSQAVHFPSRDEVYR 547
           ++L+++W L    ++  +  +A+  S   +        G  W++RL+  +  P R  V +
Sbjct: 525 VMLILVWSL----FVGMRADLARTQSPGSLGPRAYPASGVPWQRRLAMTLSTPDRRAVEK 580

Query: 548 FLESTVRPAIEEVTAVFVEKGLNVVTQPDPSNDSVSLEIGHGEERPFVYQVQMRGYFTPS 607
           FL+++V PA+E V      +        D    +++L +     R FVY VQM  +  P+
Sbjct: 581 FLQASVLPALEAVARELTRRSRPASVGRDAETGALTLTVPAEGHRDFVYGVQMSEHKLPA 640

Query: 608 FARGGMGSKEINNRRYYRAEVHLAEGSQDYDLVGYTKEQIINDILDQYERHLQFL 662
           F        ++     Y A    ++GS+ YD++G    QIIND+L Q+ER+  F+
Sbjct: 641 FTAYDATVADVR----YEARTFFSDGSRGYDIMGMADNQIINDVLFQFERYTGFV 691