Pairwise Alignments

Query, 203 a.a., general secretion pathway protein GspJ from Pseudomonas simiae WCS417

Subject, 221 a.a., type II secretion system protein GspJ from Vibrio cholerae E7946 ATCC 55056

 Score = 42.7 bits (99), Expect = 5e-09
 Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 45/188 (23%)

Query: 3   QSQQGFTLIEVMVAIMLMALVSLIAWRGLDSVTRADQHLQASTEQTEVLLRALNQMQRDI 62
           Q+  GFTLIEV+VAI + A +S+ A++ L+ V R+++     T +   L RA+  M  D 
Sbjct: 11  QNMAGFTLIEVLVAIAIFASLSVGAYQVLNQVQRSNEISAERTARLAELQRAMVIMDADF 70

Query: 63  SLRASVELTLPSAPEDGAAKTEGLAAVTVRSSDSKGFRLDVIR-----------SAPVAG 111
                 ++ L     DG A +E +        DS    L  +R              VA 
Sbjct: 71  R-----QMALRQFRTDGEAPSEQILQWKESLLDSDQHGLLFVRLGWHNPQQQFPRGEVAK 125

Query: 112 DG-------LQRVRWWLKGDSLYRAAAPARDRFP-LPAAKDGVV--VLTGVSDLQVRVW- 160
            G       L+RV WW               R+P  PA + G++  +LTGV D  V+ + 
Sbjct: 126 VGYRLFENRLERV-WW---------------RYPDTPAGQQGLISPLLTGVEDWAVQFYL 169

Query: 161 --EADKGW 166
             E  K W
Sbjct: 170 QGEWSKEW 177