Pairwise Alignments

Query, 312 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 362 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas fluorescens FW300-N2E2

 Score =  115 bits (289), Expect = 1e-30
 Identities = 89/317 (28%), Positives = 157/317 (49%), Gaps = 13/317 (4%)

Query: 3   SVALMVYPNFQSLSLS-----LGSVFECANLLRGEPAYEFHLVSESGGAVMTSQGFSV-- 55
           S+ +M++P F  LSLS     L    +  +  R     ++ ++   G  V++S G  V  
Sbjct: 42  SIGIMLWPRFPLLSLSGLTDALRHAADTGDQSRPIRC-QWKVLGTPGQRVISSSGLDVPI 100

Query: 56  NTTPIRPEGYDTLIV-SGYLEF--RLPEANLLELVKAASAQSRRVASLCMGIFVLAEAGL 112
           ++    PE +D ++V  G L+F   +P+     L +AA+AQ   +  LC G FVLA  GL
Sbjct: 101 DSELTDPERFDYIVVIGGLLDFIEAVPKTYPAFLHQAAAAQVPLIG-LCTGSFVLARHGL 159

Query: 113 LEGKRTTTHWIHAPAFRKRYPDIRLEEDKLFIVDGHVWTGAGMSAGVDLALAMVENDLGS 172
           +EG+    H  H   ++ R+P +R   ++ F++D    T AG  + ++LAL ++    G 
Sbjct: 160 MEGRTACVHAYHGDDWKHRFPTLRFVINRDFLIDRDRITCAGGVSVIELALHLIGMHCGP 219

Query: 173 DLARRIARKLVIAQR-RGSEQSQLSALLELDPKSDRVQLALAYARENLTHDLSVEALADV 231
           D A ++  ++ +A+    S   +  AL      + R+  A+    +++ H L +EA+A +
Sbjct: 220 DRAGKVVHQMTVAKNTSNSFVDRRKALGYASSSNRRLHEAVMLMEKHMAHPLDIEAIAHL 279

Query: 232 ARLSPRQFSRVFREETGQTPAKAIESLRVEAARAMMETSRHPVEVVARETGFGDRERMRQ 291
              S RQ  R+F  ET  +PA+    +R+   R ++ +S   +  +A E GF D     +
Sbjct: 280 LGTSKRQLERLFVAETNSSPAQFYRQVRLRFGRWLLVSSDRQIGEIAFECGFADAPHFIR 339

Query: 292 AFLRAFGQPPQVMQQAL 308
            F   FG  P  +++AL
Sbjct: 340 HFQSMFGLSPGKLRKAL 356