Pairwise Alignments
Query, 542 a.a., peptide ABC transporter ATP-binding protein from Pseudomonas simiae WCS417
Subject, 556 a.a., ABC transporter for D-Raffinose, ATPase component (from data) from Sinorhizobium meliloti 1021
Score = 373 bits (957), Expect = e-107
Identities = 214/509 (42%), Positives = 302/509 (59%), Gaps = 8/509 (1%)
Query: 24 AVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLLPLPMQVCG-GRLDFQGRDLASVST 82
AV D+SF + GE VA+VGESGSGK++ AR +GLL + R+++ GRD+ S
Sbjct: 44 AVKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKRATIAPQARIEYDGRDVLKFSK 103
Query: 83 EALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALKLHTDLDPPQIRERCLTMLRRIGI 142
RA+RG I M+FQEPM SLNP IG Q+ EA++ H + ER L +LR + I
Sbjct: 104 RERRALRGDRISMIFQEPMSSLNPVYTIGSQIIEAIRAHRRVSRRAAAERALELLRHVQI 163
Query: 143 KAAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIADEPTTALDCLAQLDVIELMLELT 202
E L YPHQ SGG RQR+M+A + P +LIADEPTTALD Q ++ L+ +L
Sbjct: 164 PDPEARLNQYPHQLSGGQRQRVMIAMALANDPDVLIADEPTTALDVTVQAQILNLIRKLQ 223
Query: 203 REQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGSIEDILLAPKAEYTRQLLEALPRR 262
+E G A++ I+HDL++V +++ V VM+ G+ E + E + P+ YTR+LL + P
Sbjct: 224 QELGMAVILITHDLTVVRQFSDYVYVMQLGEVKEHNTTEALFADPQHAYTRRLLSSEP-S 282
Query: 263 GVLAPLPVSNEPLVEVDQVCIEH--PGPTTFWGKRQHTRVVHSASLVIAPGETLALVGGS 320
G PLP L++ V + F + + V SL + ETL LVG S
Sbjct: 283 GSANPLPDDAPILLDGRNVRVSFTLKKGGFFRPEFKELVAVDGLSLNLRRHETLGLVGES 342
Query: 321 GSGKTTLGRSLVGLIKPCAGSIRFKGVDIL---KAANRTHRLQCQMIFQDPYSSLNPRMK 377
GSGKTT G++L+ L+ G I F+G I + R R + Q++FQDP+SSLNPRM
Sbjct: 343 GSGKTTFGQALIRLLNTDGGEIYFEGEPIHDKDRKGMRPLRSKIQIVFQDPFSSLNPRMS 402
Query: 378 IGEILAEPL-RHEPGLNAAERRERVTQTLKDIGLGEQFVERFPHQLSGGQRQRVAIGRAL 436
+G+I+ E L + G N +R +RV L G+ + RFPH+ SGGQRQR+AI RA+
Sbjct: 403 VGQIIEEGLIVNGMGENRKDRLKRVEDALVSAGMPSNILSRFPHEFSGGQRQRIAIARAV 462
Query: 437 VRHPQLVIADEPISALDMTIQKQILELFERLQAQYGFACLFISHDLAAVERIAHRVAVMH 496
P+ ++ DEP SALD+++Q QI+EL RLQ + G + L ISHDL V + HRV VM
Sbjct: 463 ALEPEFILLDEPTSALDLSVQAQIIELLRRLQDERGLSYLVISHDLKVVRALCHRVVVMQ 522
Query: 497 QGNVVEVGAREQIFDHPQHPYTRQLLAAA 525
G +VE G ++ ++P+ YT +L+ AA
Sbjct: 523 DGKIVEEGPVSEVLNNPKTAYTERLVKAA 551
Score = 169 bits (427), Expect = 3e-46
Identities = 109/308 (35%), Positives = 162/308 (52%), Gaps = 33/308 (10%)
Query: 239 SIEDILLAPKAEYTRQLLEALPRRGVLAPLPVSNEPLVEVDQVCIEHPGPTTFWGKRQHT 298
+IE I+ AP+ R + + P+++ +V + +F +
Sbjct: 3 TIESIVPAPEERRDRDMKD--------------ERPVIDARKVAV------SFKVENGTV 42
Query: 299 RVVHSASLVIAPGETLALVGGSGSGKTTLGRSLVGLIKPCA-----GSIRFKGVDILKAA 353
+ V S + GET+A+VG SGSGK+ R+++GL+ A I + G D+LK +
Sbjct: 43 QAVKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKRATIAPQARIEYDGRDVLKFS 102
Query: 354 NRTHRL----QCQMIFQDPYSSLNPRMKIGEILAEPLRHEPGLNAAERRERVTQTLKDIG 409
R R + MIFQ+P SSLNP IG + E +R ++ ER + L+ +
Sbjct: 103 KRERRALRGDRISMIFQEPMSSLNPVYTIGSQIIEAIRAHRRVSRRAAAERALELLRHVQ 162
Query: 410 L--GEQFVERFPHQLSGGQRQRVAIGRALVRHPQLVIADEPISALDMTIQKQILELFERL 467
+ E + ++PHQLSGGQRQRV I AL P ++IADEP +ALD+T+Q QIL L +L
Sbjct: 163 IPDPEARLNQYPHQLSGGQRQRVMIAMALANDPDVLIADEPTTALDVTVQAQILNLIRKL 222
Query: 468 QAQYGFACLFISHDLAAVERIAHRVAVMHQGNVVEVGAREQIFDHPQHPYTRQLLAA--A 525
Q + G A + I+HDL V + + V VM G V E E +F PQH YTR+LL++ +
Sbjct: 223 QQELGMAVILITHDLTVVRQFSDYVYVMQLGEVKEHNTTEALFADPQHAYTRRLLSSEPS 282
Query: 526 SPLEQLPD 533
LPD
Sbjct: 283 GSANPLPD 290
Score = 159 bits (403), Expect = 2e-43
Identities = 95/237 (40%), Positives = 140/237 (59%), Gaps = 8/237 (3%)
Query: 23 LAVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLLPLPMQVCGGRLDFQGRDLASVST 82
+AVD LS ++ E + LVGESGSGKT +A I LL GG + F+G +
Sbjct: 321 VAVDGLSLNLRRHETLGLVGESGSGKTTFGQALIRLL----NTDGGEIYFEGEPIHDKDR 376
Query: 83 EALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALKLHTDLDPPQIR-ERCLTMLRRIG 141
+ +R +R + I +VFQ+P SLNP + +GQ + E L ++ + + R +R L G
Sbjct: 377 KGMRPLR-SKIQIVFQDPFSSLNPRMSVGQIIEEGLIVNGMGENRKDRLKRVEDALVSAG 435
Query: 142 IKAAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIADEPTTALDCLAQLDVIELMLEL 201
+ + L +PH+FSGG RQRI +A + L P ++ DEPT+ALD Q +IEL+ L
Sbjct: 436 MPS--NILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIELLRRL 493
Query: 202 TREQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGSIEDILLAPKAEYTRQLLEA 258
E+G + L ISHDL +V H+VVVM+ GK VE+G + ++L PK YT +L++A
Sbjct: 494 QDERGLSYLVISHDLKVVRALCHRVVVMQDGKIVEEGPVSEVLNNPKTAYTERLVKA 550