Pairwise Alignments

Query, 542 a.a., peptide ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

Subject, 546 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  411 bits (1057), Expect = e-119
 Identities = 223/530 (42%), Positives = 323/530 (60%), Gaps = 10/530 (1%)

Query: 5   PVLLNVEHLKIRVGEHGPL--AVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLLPLP 62
           P LL V+ L +     G    A   +SF +  GE + ++GESGSGK+++A A +GL+  P
Sbjct: 4   PHLLEVKDLTVDFLSLGGAFRATSGVSFHVDAGETLVILGESGSGKSVSASAIMGLIDTP 63

Query: 63  M-QVCGGRLDFQGRDLASVSTEALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALKLH 121
              +C G + ++GRDL+S+S    R + G  I M+FQ+P+  LNP   IG Q+ E   +H
Sbjct: 64  PGDICAGSVAYRGRDLSSLSEGERRDLNGRRIAMIFQDPLSHLNPVYTIGWQLEEVFTVH 123

Query: 122 TDLDPPQIRERCLTMLRRIGIKAAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIADE 181
                 + R+R + +L R+GI   E+ ++ YPHQFSGG RQRIM+   + LRP +LIADE
Sbjct: 124 GVASGAEARQRAIEILGRVGIPEPEKRIDQYPHQFSGGQRQRIMIGMAIALRPEILIADE 183

Query: 182 PTTALDCLAQLDVIELMLELTREQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGSIE 241
           PTTALD   Q  ++EL+ +L  E G AI+ I+HDL + A  A +V+VM+ G+ VE+G   
Sbjct: 184 PTTALDVSVQAQILELLKKLQAEDGLAIIMITHDLEVAANMADRVIVMKSGRIVEEGEAR 243

Query: 242 DILLAPKAEYTRQLLEALPR---RGVLAPLPVSNEPLVEVDQVCIEHPGPTTFWGKRQHT 298
            +   P   YTR L+ ALP    R    P   + +P++EV  +   +   + F+ K    
Sbjct: 244 AVFENPAHSYTRTLINALPHADDRAPPRPARPAGKPILEVKNIDKFYTLSSGFFAKPARL 303

Query: 299 RVVHSASLVIAPGETLALVGGSGSGKTTLGRSLVGLIKPCAGSIRFKGVDILKAANR--- 355
             V + S  +A GET+ +VG SGSGK+T+ R L+GL +   G   F G D+LK   +   
Sbjct: 304 HAVKNLSFDVAAGETIGIVGESGSGKSTVARVLLGLNEASGGEALFHGRDVLKMDRKQLL 363

Query: 356 THRLQCQMIFQDPYSSLNPRMKIGEILAEPLR-HEPGLNAAERRERVTQTLKDIGLGEQF 414
             R + QM+FQDPYSS+NPRM + +I++EP R H+  L     R+RVT+ L  +GL  + 
Sbjct: 364 AFRRKVQMVFQDPYSSMNPRMTVFDIVSEPWRIHKDILEKTRWRDRVTELLGLVGLNPEH 423

Query: 415 VERFPHQLSGGQRQRVAIGRALVRHPQLVIADEPISALDMTIQKQILELFERLQAQYGFA 474
            +R+PHQ SGGQRQR+AI RAL   P+LV+ DE +SALD+++Q Q+++L   L+ + G A
Sbjct: 424 AKRYPHQFSGGQRQRIAIARALACDPELVVCDEAVSALDVSVQVQVIDLLAELRDRLGLA 483

Query: 475 CLFISHDLAAVERIAHRVAVMHQGNVVEVGAREQIFDHPQHPYTRQLLAA 524
            +FI+HDL  V   A R+ VM  G +VE    E+IF +PQH YTRQL+ A
Sbjct: 484 YIFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIFRNPQHAYTRQLINA 533



 Score =  175 bits (443), Expect = 5e-48
 Identities = 96/239 (40%), Positives = 143/239 (59%), Gaps = 8/239 (3%)

Query: 24  AVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLLPLPMQVCGGRLDFQGRDLASVSTE 83
           AV +LSF +A GE + +VGESGSGK+  AR  +GL     +  GG   F GRD+  +  +
Sbjct: 305 AVKNLSFDVAAGETIGIVGESGSGKSTVARVLLGL----NEASGGEALFHGRDVLKMDRK 360

Query: 84  ALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALKLHTD-LDPPQIRERCLTMLRRIGI 142
            L A R   + MVFQ+P  S+NP + +   +SE  ++H D L+  + R+R   +L  +G+
Sbjct: 361 QLLAFR-RKVQMVFQDPYSSMNPRMTVFDIVSEPWRIHKDILEKTRWRDRVTELLGLVGL 419

Query: 143 KAAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIADEPTTALDCLAQLDVIELMLELT 202
                  + YPHQFSGG RQRI +A  +   P L++ DE  +ALD   Q+ VI+L+ EL 
Sbjct: 420 NPEHA--KRYPHQFSGGQRQRIAIARALACDPELVVCDEAVSALDVSVQVQVIDLLAELR 477

Query: 203 REQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGSIEDILLAPKAEYTRQLLEALPR 261
              G A +FI+HDL +V  +A +++VM+ G+ VE  + E+I   P+  YTRQL+ A P+
Sbjct: 478 DRLGLAYIFITHDLPIVRHFADRIIVMKSGEIVEHATTEEIFRNPQHAYTRQLINATPK 536