Pairwise Alignments

Query, 284 a.a., peptide ABC transporter permease from Pseudomonas simiae WCS417

Subject, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

 Score =  183 bits (464), Expect = 5e-51
 Identities = 104/256 (40%), Positives = 147/256 (57%), Gaps = 1/256 (0%)

Query: 29  LVVLIALALMGL-VWSPFDPLKIDLMSRFQAPSAAHWLGTDEFGRDVFSRLLIGARTSLW 87
           +++LI LA++ L ++S +     D  +    PSA HW GTD  GRD+F R L+G R SL 
Sbjct: 45  VLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFGTDALGRDLFVRTLVGGRISLM 104

Query: 88  VSLLTVSVAVLAGTLIGMLAGYLRGWTDRVLMMFNDALLAFPGILMALGIMAIIGASKYG 147
           V ++   VAVL GTL G  +G++ G TDRV+M   + L A P + + + ++   G +   
Sbjct: 105 VGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGRNIVL 164

Query: 148 IVLALGIAYTPSVVRVVRGTVLSLRELEYIEASRVIGNSELYTMLRHIAPNCLAPLCVLA 207
           I +A+G      + R+VRG  LSLR  E+IEA+ V G S+   + RHI PN L  + V +
Sbjct: 165 IFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYS 224

Query: 208 TSMFGWALLSESALSFLGLGVPPPAATWGNMLASSRPYIASAPWLGVFPGLFICLTLLAI 267
           T +    +L+ES LSFLGLGV  P  +WG +L      +  A W  +FP  F+ LTL   
Sbjct: 225 TLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVLTLFCF 284

Query: 268 NLFGDALRDRLDPRMR 283
           N  GD LRD LDP+ R
Sbjct: 285 NYVGDGLRDALDPKDR 300