Pairwise Alignments

Query, 313 a.a., peptide ABC transporter from Pseudomonas simiae WCS417

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

 Score =  188 bits (477), Expect = 2e-52
 Identities = 114/315 (36%), Positives = 173/315 (54%), Gaps = 13/315 (4%)

Query: 1   MLRFILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGDMADPQSLADMRHTLGLDHS 60
           ML+FI +++  A+PT+L++  + F L+R  PG+P          P+ +A++    GLD  
Sbjct: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNP--FSSERPLPPEVMANINAKYGLDKP 58

Query: 61  LVTQFLIWFKAVLSFDLGFSISTKQ-AVLPLILDRFSVSATIVLVAVLFATLIAVPIGLI 119
           +  Q+L +   ++  D G S   K   V  LI     VS  I L A +F  ++ V +G I
Sbjct: 59  VSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTI 118

Query: 120 AAWKQNSALDLGLVSIATLLLSIPSFWLGLLLLHAFGIQLGWLPVVGYVSFSQAPWQ--A 177
           AA KQN+ +D  ++S A L + +PSF L  +L++ F IQ    P  G        WQ   
Sbjct: 119 AALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG--------WQDGG 170

Query: 178 MSYMVLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWKHALPNAFA 237
             YM LPV+ ++L+ V    R+ R S IE L   +I  ARAKGLS   ++ KHAL  A  
Sbjct: 171 FEYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALL 230

Query: 238 PTWTLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDYPVLQGCLLLITFIYVLVN 297
           P  + +G     ++ G  V+ET+F LPGIG+L V+A F RDY ++ G  +LI F+++L N
Sbjct: 231 PVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFN 290

Query: 298 LCVDLLYPLFDPRVK 312
             VD+L    DP+++
Sbjct: 291 AIVDILLAYIDPKIR 305