Pairwise Alignments

Query, 313 a.a., peptide ABC transporter from Pseudomonas simiae WCS417

Subject, 314 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  218 bits (554), Expect = 2e-61
 Identities = 120/316 (37%), Positives = 185/316 (58%), Gaps = 11/316 (3%)

Query: 1   MLRFILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGDMADP---QSLADMRHTLGL 57
           M+ F+L++LA+ VP LL  S+++F ++RL P DPA+  L     P   Q+LA+ R  LGL
Sbjct: 1   MVSFVLKRLALLVPMLLGASLVIFLMLRLGPSDPAMDYLRLSRIPPTVQALAETRQRLGL 60

Query: 58  DHSLVTQFLIWFKAVLSFDLGFSISTKQAVLPLILDRFSVSATIVLVAVLFATLIAVPIG 117
           D  L  Q+ +W    L  D G S +T + VLP +L     +  +  VA+     +++P+G
Sbjct: 61  DQPLAVQYWVWLNKALHLDFGVSYATGRPVLPDLLHYLPATLHLAGVALALTLGLSIPLG 120

Query: 118 LIAAWKQNSALDLGLVSIATLLLSIPSFWLGLLLLHAFGIQLGWLPVVGYVSFSQAPWQA 177
           + AA ++++  D  +  +A L +S+P+FWLG LL+  F ++LGWLP +G           
Sbjct: 121 MWAARRRDALPDQIVRGVAFLGVSMPNFWLGFLLVLVFSVELGWLPAMGR--------GG 172

Query: 178 MSYMVLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWKHALPNAFA 237
             +M++P V +  + +    R+ RAS +EV    ++ +AR +GLS   V   H L NA  
Sbjct: 173 AEHMIMPAVAIAFMSLSINARLLRASMLEVSGQRHVYYARLRGLSAAKVERAHILRNALL 232

Query: 238 PTWTLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDYPVLQGCLLLITFIYVLVN 297
           P  T  G+ +G L+GG  V+E++F  PG+GR  V AIF RDYPV+Q   LL+  I+VL N
Sbjct: 233 PIITATGMHVGELIGGTLVIESIFGWPGVGRFAVSAIFNRDYPVIQCFTLLMVLIFVLCN 292

Query: 298 LCVDLLYPLFDPRVKL 313
           L VD++Y   DPR++L
Sbjct: 293 LIVDIVYAWADPRIRL 308