Pairwise Alignments

Query, 518 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 531 a.a., periplasmic dipeptide-binding protein from Sinorhizobium meliloti 1021

 Score =  122 bits (306), Expect = 3e-32
 Identities = 128/542 (23%), Positives = 223/542 (41%), Gaps = 43/542 (7%)

Query: 1   MNRLLNGTLCVTLALGAGLAQAETALRVGLNADIRSTEPGVNRDENTDTVMLHIVEG--L 58
           +  LL  T   TL  G   ++       G        +PG+     T     H V    L
Sbjct: 4   LTTLLAATAIATLMAGTAWSKTFVFCSEG---SPEGFDPGLYTAGTTFDAAAHTVYSRLL 60

Query: 59  VAHREDASVGPLLAREVKRSDDGMTYTFTLRDRVHFQNGATLT------AQDVKWTWERY 112
              +      P LA     SDDG+ YTF LR  V FQ     T      A DV ++ ER 
Sbjct: 61  EFKKGTTETEPGLAESWTISDDGLEYTFKLRPGVKFQTTEFFTPTRELNADDVIFSIERQ 120

Query: 113 LNPKTQWRCLAE------FDGRGGAKIT-GIDTPDPLTVVFHLDQPSGLFLASMARPDCG 165
                 W           F G G  ++   ++  D +TV   L +    FLA++A P   
Sbjct: 121 WKSDHPWHGYVTGGSWEYFAGMGLPELLESVEKVDDMTVKIKLKRKEAPFLANLAMPFAS 180

Query: 166 GSGILHPDSLAADGSW----KAPIGTGPFSLGEWKPGQYVVLSRFKDYSPRDDAGPDGFT 221
                + D L A+G      + P+GTGPF+   ++    +   R+K       A PD + 
Sbjct: 181 IMSKEYADKLQAEGKMNQLNQMPLGTGPFAFVGYQQDAVI---RYK-------AHPDFWG 230

Query: 222 GKKTALVDAVRFMVIPDPSSAKAALMSNNIDLLPNVSASDAQELKSTPGVQISFSPIMAI 281
           GK+   +D + F +  D +     L +    L+P  +A+D + +K+ P +++     + +
Sbjct: 231 GKQK--IDDLVFAITTDAAVRFQKLQAGECHLMPYPNAADVEAMKADPNLKVMEQAGLNV 288

Query: 282 CGLLFQTNDPLLKDVRIRQAIAHSLDYGQMVTALSNGTSEPNNSAIPQTSPFYSATAKQG 341
             L + T  P    V +R+A+  +++   +V A+  G + P  + IP T   Y+   +  
Sbjct: 289 AYLAYNTTQPPFDKVEVRKALNKAINKQAIVDAVFQGQATPATNPIPPTMWSYNEHIEDD 348

Query: 342 YRYDPQEAQRLLKEAGYHGQPIK---MIVNKRYS-QMFDMGLLSQAMAVASGLNIQMETL 397
             YDP+ A+++L++AG     +K   M V + Y         L QA     G+ +++ + 
Sbjct: 349 -TYDPEAAKKMLEDAGVKDLSMKVWAMPVARPYMLNARRAAELMQADFAKVGVKVEIVSY 407

Query: 398 EWGTQLERYQSGNYQ--MMAFSYSSRLDPATSFDSLMGDKT--KEPRKVWDNPQAQAVLR 453
           EW   LE+ ++ +    ++        DP    D+L+G        R  W + +   ++ 
Sbjct: 408 EWAEYLEKSKAKDRDGAVILGWTGDNGDPDNFLDTLLGCDAVGGNNRAQWCDKEFDELVT 467

Query: 454 DAVRESDTAKRQALFDQLHTMMIHDTPMVIIYNGTVAAALRDSVKGFHSWPVSSPRLWGV 513
            A   SD A+R  L+++   +   + P   + +      +R +V+GF   P+      GV
Sbjct: 468 KAKEASDVAERTKLYEEAQVVFKREAPWATLDHSLSIVPMRKNVEGFVQSPLGDFAFDGV 527

Query: 514 SL 515
            +
Sbjct: 528 DI 529