Pairwise Alignments

Query, 654 a.a., ATPase AAA from Pseudomonas simiae WCS417

Subject, 569 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  270 bits (690), Expect = 1e-76
 Identities = 149/304 (49%), Positives = 192/304 (63%), Gaps = 5/304 (1%)

Query: 342 GSSRAIQDALHLGRIASRSDSTTLILGESGTGKELFAQAIHNGSDRCNGPFVAVNCGAIP 401
           G S A+Q   HL    + +D+T L+ GESGTGKEL A+A+HN   R  GP + VNC A+P
Sbjct: 269 GLSPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELVAEALHNAGPRATGPLIKVNCAALP 328

Query: 402 RDLVQSELFGHVEGAFTGSARGGSAGKFELADGGTIFLDEIGDMSFDAQVSLLRVLQEGE 461
             L++SELFGHV GAFTG+ R    G+F+LA GGTIFLDEIGD+S   Q+ LLRVLQE E
Sbjct: 329 ETLLESELFGHVRGAFTGALRD-RVGRFQLAHGGTIFLDEIGDLSPQVQLRLLRVLQERE 387

Query: 462 ITRVGAKNSRQVDVRIIAATHRNLSQAVAQGAFREDLYYRLNVLNLTVPPLRMRREDIPL 521
             RVG   + +VDVR+IAATHRNL + VA G FREDLYYRL V+ L +PPLR R ED+ L
Sbjct: 388 FERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDLYYRLRVVELHMPPLRERHEDLAL 447

Query: 522 LARHFLARCARSLRKSVQGFSPEAMALLSAYGWPGNVRELENSIERATNLAMGALIEPVD 581
           LA HF+    +   + V GF+  A   L  + WPGNVREL +++E    L  G  I+  D
Sbjct: 448 LAEHFVGVFNQQFSRCVMGFTEAASRALMTHSWPGNVRELRHAVEHGFILCKGERIDLAD 507

Query: 582 LPLENRQRAPLRAYEPQAAQDLSSHERHAIVAALTNTGGNIRLAARQLNVSRGGLYNKMS 641
           LP +   +    +  P+A  + S     A+  AL   GGN   AAR L V+R  LY K++
Sbjct: 508 LPPD--VQGTEASVFPRA--ERSGVHEAAVREALKKAGGNKARAARLLGVARQTLYRKLA 563

Query: 642 RFGL 645
            +G+
Sbjct: 564 EYGI 567