Pairwise Alignments

Query, 308 a.a., rhizopine-binding protein from Pseudomonas simiae WCS417

Subject, 317 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  132 bits (332), Expect = 1e-35
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 8/305 (2%)

Query: 5   SLFAATLLLLFSQWSFAAYRIGVSIARVDDNFMTYVRTGLEAAARQQDVQIQFEDAQGDV 64
           ++ AA L    S    A  +I ++   +   +  Y+       A+  +V++  +DAQ   
Sbjct: 12  AVLAAGLTFQLSPAFAAGEKILINFQTLSIPYFIYMHEQASQEAKVLNVELLVQDAQSSS 71

Query: 65  VRQLNQVEGFLNQKVDAVIVLPVDTAATANMTRAAVAAKTPLVYVNRHPDERTLPKGVVT 124
            +Q + VE  L Q VDA++V P D  A A      ++ K PLV V+R  +    P  V  
Sbjct: 72  TKQSSDVENALTQGVDAMVVAPNDVTALAPALNEVLSEKVPLVTVDRRVEGTDTP--VPY 129

Query: 125 VASNDIEAGQLQMRYLAEKLAGKGNVAIIMGDLAQNATHDRTEGAKQVLKDFPG-IKVVE 183
           V ++ +  G+L    +   +     VA I G    +   DR +G  + LK   G  ++V 
Sbjct: 130 VTADSVAGGRLMAELVTSNMKNGARVAFIGGTPGSSTAIDRAKGVHEGLKAGGGKFQLVA 189

Query: 184 QQSADWQRSKGMDLTSNWL--LAGTQFDAIVANNDEMAIGAAMALQQAGKAKGDVAIVGI 241
           +QS +W+R+K M +  N L  L+    DAI+  + +MA+GAA A++  G  KG V ++G 
Sbjct: 190 EQSGEWERAKAMSVAENILTSLSANPPDAIICASGDMALGAAEAVRATG-LKGKVKVIGF 248

Query: 242 DGLPDGLAAIKRGLLTASVFQDPKAQATQAVQAAVRMIKGEA-IEPEVWVPFELIKPEQV 300
           D  P+ L AI+ G +   V Q P  Q   A++ AV+ ++GE  +E  +  PF +I PE +
Sbjct: 249 DAYPEVLRAIRDGDIAGIVEQSPSKQIRTALRMAVKKVRGEGELETVIVQPF-MITPENL 307

Query: 301 AVFEQ 305
           +  EQ
Sbjct: 308 SQAEQ 312