Pairwise Alignments

Query, 647 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  248 bits (634), Expect = 5e-70
 Identities = 177/527 (33%), Positives = 277/527 (52%), Gaps = 19/527 (3%)

Query: 131 DTKLN--NYDPRVRPWYQAAIAAPGKTVRTGAYYWAPDDVTLIGTVHTVADAT---GNIL 185
           D  LN  +YDPRVR WY+ A AA GK + T  Y      VT+   V T+A+     G ++
Sbjct: 120 DPSLNTADYDPRVRGWYKEAKAA-GKPITTEPYV----SVTMQTLVVTLAEPVRYQGQLI 174

Query: 186 GVVGLDVSLKQLTELVRNIKLGDSGYLMLVEGNGNVLVDPSD---AKHNFKPLADLGPNY 242
           GV   +++L +L + V  I++   GY +LV   G ++  P+     K   +  A L  + 
Sbjct: 175 GVAASNLALDKLIKDVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMSAQLTISK 234

Query: 243 AELAKRGDGVTQIEIDG--VAYMANMVSSKDLGWRFIGLIKRDEVMAGATRLTWLIAAIA 300
             +A +   + Q+ +DG     MA  V++ D  W  + ++ +  +      +  +   I 
Sbjct: 235 LNIAAKDHSLFQLSMDGRDKVLMAEEVANTD--WLLVMVMDKGVLEQPLNDMLMVQIGIG 292

Query: 301 AVLALVFAIVGASFASVIVRPIRGVADGLQEIAEGEGDLTRQLKVQGKDETASLAGWFNQ 360
             + LV A++ + F +  +  +  +A+ L +IAEG+GDLTR+L V+ +DE   LA  FN+
Sbjct: 293 LGILLVMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNK 352

Query: 361 FLSMIAQLVQRIGNASSDLQSAAADTREVAHNMNQAAGRQREAVELVSTAFNEMVATANE 420
           F+  + Q+V+ +   S  L   A      A   ++    Q++ + +V+TA  EM +   E
Sbjct: 353 FVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAE 412

Query: 421 VARSCSAAATSADEGYRDVHDGQQHIGEATGSVLKLSEDLQRSTQTMQQLEQDSKNINTI 480
           +A +    A +A +  +   DG   + ++  S+ +L+++L  + + + +LE  +  I+TI
Sbjct: 413 IASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTI 472

Query: 481 LDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGEIDSLLGNL 540
           L TIR IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR L++RT  ST EI + +  L
Sbjct: 473 LSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGL 532

Query: 541 ARRTQEVTQQMQGSLLVSHTSVERIQQARDSFDKIRGSVDSIRDQNTQIATAAEEQHQVA 600
            + T      M  S  +  TSV  + Q   S   I  ++  I D  TQIA+AAEEQ  V 
Sbjct: 533 QKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVT 592

Query: 601 EEINRHIAQI-HADAQLVEGFAHSAQTGSGRLTDISGQLKGLVGRFK 646
            +IN +   +     QL E    S Q     L  ++ +L   + RFK
Sbjct: 593 ADINVNTESVREVSDQLAEEAQQSVQQAKS-LHAMAQELNKEISRFK 638