Pairwise Alignments

Query, 647 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  275 bits (702), Expect = 6e-78
 Identities = 192/650 (29%), Positives = 310/650 (47%), Gaps = 23/650 (3%)

Query: 1   MNIKQKLTWAFAAIACVPVILVAVLVVLNLREGALANFLDSSGREIRQIDNGMKQFFDGI 60
           M+IKQK+            ++V V+     RE      +D       ++ N +K     I
Sbjct: 13  MSIKQKVVLGVTLAVLASTLIVGVMAQRQAREVLEHRLVDL------ELPNILKLIKSDI 66

Query: 61  SQNVDYVAKDPRVVAAKDLKSYAGADAAQIPLTPTN--KELLEIFDQFAKSHPSTAYLSL 118
              V  +    + +A+ +    A A   + P T     K+L  + DQ+  +  S A    
Sbjct: 67  DHEVLQLLASAQQIASNEFVQQAIATTERDPATEALLVKQLNNLRDQYRLNDASVA---- 122

Query: 119 GLKDGGYASWPDDTKLNNYDPRVRPWYQAAIAAPGKTVRTGAYYWAPDDVTLIGTVHTVA 178
             K   Y  W  +  L   + +   W+   I + GK      +  A  +V +      V 
Sbjct: 123 NRKTAYY--WNQNGFLRELNQQQDGWFFGFIGS-GKPTMVSMFQEANGEVKMFANYQLV- 178

Query: 179 DATGNILGVVGLDVSLKQLTELVRNIKLGDSGYLMLVEGNGNVLV--DPSDAKHNFKPLA 236
              GN +   G+  S+  +  L+ + K+ D+G++ L    G V +       K + + + 
Sbjct: 179 --NGNTMS--GMSKSMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQQIY 234

Query: 237 DLGPNYAELAKRGDGVTQIEIDGVAYMANMVSSKDLGWRFIGLIKRDEVMAGATRLTWLI 296
             G + A L K G  +   +  G   M   +  + + W  +G +   EV A    +   +
Sbjct: 235 GSGAS-ALLNKSGFNLISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRM 293

Query: 297 AAIAAVLALVFAIVGASFASVIVRPIRGVADGLQEIAEGEGDLTRQLKVQGKDETASLAG 356
                 +A +F  +G   A+ I  PI  +A    ++  G+GDL+++++V+G DE A L+ 
Sbjct: 294 MLTTLAVAAIFIFMGIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSK 353

Query: 357 WFNQFLSMIAQLVQRIGNASSDLQSAAADTREVAHNMNQAAGRQREAVELVSTAFNEMVA 416
            FN F+  I Q ++ +   S +LQ AA      A   +  + +QR+    V TA N+M A
Sbjct: 354 GFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGA 413

Query: 417 TANEVARSCSAAATSADEGYRDVHDGQQHIGEATGSVLKLSEDLQRSTQTMQQLEQDSKN 476
           T +E+A + + AA +A++   +   G+  + +A  ++ +L+ D++ + + ++QL   ++ 
Sbjct: 414 TISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQE 473

Query: 477 INTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGEIDSL 536
           I +ILD IR I+EQTNLLALNAAIEAARAGDQGRGFAVVADEVR LA RTA ST EI  +
Sbjct: 474 IGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKM 533

Query: 537 LGNLARRTQEVTQQMQGSLLVSHTSVERIQQARDSFDKIRGSVDSIRDQNTQIATAAEEQ 596
           +  L    +     M     V+H  V    +A      I   +  I D+NTQ+ATA EEQ
Sbjct: 534 INQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQ 593

Query: 597 HQVAEEINRHIAQIHADAQLVEGFAHSAQTGSGRLTDISGQLKGLVGRFK 646
             V   IN++I +I+A  ++    A      S  L ++SG+L  LVG FK
Sbjct: 594 STVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFK 643