Pairwise Alignments

Query, 647 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  274 bits (700), Expect = 1e-77
 Identities = 205/639 (32%), Positives = 318/639 (49%), Gaps = 54/639 (8%)

Query: 1   MNIKQKLTWAFAAIACVPVILVAVLVVLNLREGALANFLDSSGREIRQIDNGMKQFFDGI 60
           M   QK+  A +A+    + L++   +  +RE   +   DS    ++ + N ++      
Sbjct: 1   MRFSQKIVAASSALLLCVIALLSFQQLSTVREEIESLVQDSLMEMVKGVKNTIES----- 55

Query: 61  SQNVDYVAKDPRVVAAKDLKSYAGADAAQIPLTPTNKELLEIFDQFAKS-----HPSTAY 115
               D  +K          K  A +    + L PTNK        FAKS     +   ++
Sbjct: 56  ----DLASK----------KGLAQSTTEILQLDPTNKA-------FAKSVLESPNLKGSF 94

Query: 116 LSLGLKDGGYASWPDDTKLNN---------YDPRVRPWYQAAIAAPGKTVRTGAYYWAPD 166
           L++GL   GY S  D T + N         YDPR RPWY  A     K V T  Y     
Sbjct: 95  LAIGL---GYES--DATVVENDDGWEPNADYDPRKRPWYVDA-KRERKLVVTEPYVDIST 148

Query: 167 DVTLIGTVHTVADATGNILGVVGLDVSLKQLTELVRNIKLGDSGYLMLVEGNGNVLVDPS 226
              +I ++ T      N +G +  DV L QL +LV ++ L D+GYL +   +G  +  P+
Sbjct: 149 KKIII-SIGTPVYQQSNFVGAMFYDVELTQLAQLVNSVNLFDAGYLFITTKDGVTIAHPN 207

Query: 227 DAKHNFKPLADLGPNYAELAKRGDGVTQIEIDGVAYMANMVSSKDLGWRFIGLIKRDEVM 286
            A++N +  +   PN        +G  +IE+DG  Y+          W +IG +  + + 
Sbjct: 208 -AENNGEKFSQFLPN----VDLKEGTQRIELDGKYYLVKFAQVPSESW-YIGAVVDESIA 261

Query: 287 AGATRLTWLIAAIAAVLALVFAIVGASFA-SVIVRPIRGVADGLQEIAEGEGDLTRQLKV 345
                     + I  V+ ++ +I+G SF   V+++P+  ++  ++++A G+GDLT++L  
Sbjct: 262 FAMVDDLRHSSLIYTVIGVLLSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDT 321

Query: 346 QGKDETASLAGWFNQFLSMIAQLVQRIGNASSDLQSAAADTREVAHNMNQAAGRQREAVE 405
               E A LA  FN F   + + +Q +    +++      T   AH    A  +Q + +E
Sbjct: 322 NTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELE 381

Query: 406 LVSTAFNEMVATANEVARSCSAAATSADEGYRDVHDGQQHIGEATGSVLKLSEDLQRSTQ 465
            ++TA +EM  TA EVA +   AA +A E      DG + + + T S+  LS  ++++ +
Sbjct: 382 QLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVE 441

Query: 466 TMQQLEQDSKNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARR 525
            ++ LE  + NI TIL  I  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR LA+R
Sbjct: 442 EVKGLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQR 501

Query: 526 TADSTGEIDSLLGNLARRTQEVTQQMQGSLLVSHTSVERIQQARDSFDKIRGSVDSIRDQ 585
           T  ST EI +++  L      V+  M  S   +  +V++ Q A +S  +IRG++  I D 
Sbjct: 502 TQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDM 561

Query: 586 NTQIATAAEEQHQVAEEINRHIAQIHADAQLVEGFAHSA 624
           N QIA+AAEEQ  VAEEIN +  +I   +  V   A SA
Sbjct: 562 NMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSA 600