Pairwise Alignments

Query, 647 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  279 bits (714), Expect = 2e-79
 Identities = 188/534 (35%), Positives = 285/534 (53%), Gaps = 10/534 (1%)

Query: 119 GLKDGG-YASWPDDTKLNNYDPRVRPWYQAAIAAPGKTVRTGAYYWAPDDVTLIGTVHTV 177
           G  DG  Y S P+  + + YDPR RPWY+ A +A GK + T AY  A     L+ T+   
Sbjct: 101 GTTDGAMYRSHPERNRAD-YDPRTRPWYKDAASA-GKQIITTAYSDAITGALLV-TIAEP 157

Query: 178 ADATGNILGVVGLDVSLKQLTELVRNIKLGDSGYLMLVEG-NGNVLVDPSDAKHNFKPLA 236
               GN+ GVVG DV + QL   V ++  G +   ML++G NG+ L  P D     KP+ 
Sbjct: 158 VRLNGNMSGVVGADVLIDQLIADVISMDAGKNAQTMLIDGQNGSFLAHP-DKSLLLKPVT 216

Query: 237 DLGP----NYAELAKRGDGVTQIEIDGVAYMANMVSSKDLGWRFIGLIKRDEVMAGATRL 292
            L         E A     +  ++++GV       +  D  W F   +  D   A  + L
Sbjct: 217 TLSSALDMRTIERAANQGELLALKLNGVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSEL 276

Query: 293 TWLIAAIAAVLALVFAIVGASFASVIVRPIRGVADGLQEIAEGEGDLTRQLKVQGKDETA 352
              +   A ++ ++  ++ +   S + R +  V+  L+EIA G+ DLT++L+ +  DE  
Sbjct: 277 LTGLITTALLITVIVVVIVSWLVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVG 336

Query: 353 SLAGWFNQFLSMIAQLVQRIGNASSDLQSAAADTREVAHNMNQAAGRQREAVELVSTAFN 412
            LA  FN F+S +  +V ++ + S+ L   +  T   A   +     Q++ + +V+TA N
Sbjct: 337 QLASNFNTFVSNMHTMVLKLSHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAIN 396

Query: 413 EMVATANEVARSCSAAATSADEGYRDVHDGQQHIGEATGSVLKLSEDLQRSTQTMQQLEQ 472
           EM A   E+A +    A +A E       G   + +   S+  L+E++Q +T+ +Q+LE 
Sbjct: 397 EMAAATQEIAGNADHTAQNAGEAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEA 456

Query: 473 DSKNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGE 532
               I+TIL TI++IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR L++RT  ST E
Sbjct: 457 HGHQISTILSTIQNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKE 516

Query: 533 IDSLLGNLARRTQEVTQQMQGSLLVSHTSVERIQQARDSFDKIRGSVDSIRDQNTQIATA 592
           I  ++  L   T +    M  S  ++ TSV+   +A  S ++I  +V+ I D  TQIA+A
Sbjct: 517 IQQMIETLQATTGKAVGIMDDSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASA 576

Query: 593 AEEQHQVAEEINRHIAQIHADAQLVEGFAHSAQTGSGRLTDISGQLKGLVGRFK 646
           AEEQ  V  EI R+   I   +  +   AHSA   +  L+++S +L+  + RFK
Sbjct: 577 AEEQASVTSEITRNTVGIRDVSNDLAQEAHSAAEQAAELSELSHELEQEIRRFK 630