Pairwise Alignments

Query, 333 a.a., sugar ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 71/289 (24%), Positives = 137/289 (47%), Gaps = 11/289 (3%)

Query: 1   MKSFKRTLIATALALLALPAMADSAHPKIGFSIDDLRLERWSRDRDYFVAAAEKLDAKVF 60
           M+  K T + +A  L    +    A   +   +  L    +   +D   A A++L   + 
Sbjct: 1   MRMKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLI 60

Query: 61  VQSADANEQKQISQIENLISRGVDVIVIVPFNATVLTNAVAEAKKAGIKVVSYDRLILNA 120
           V  +  +  K++S +E+L  RGV  I+I P ++  ++NA+  A ++ I V++ DR     
Sbjct: 61  VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120

Query: 121 DIDAYISFDNEKVGEMQASGV-LQAAPKGNYFLLGGAPTDNNAKVLREGQMKVLQPAIDK 179
           ++ ++I+ DN   GEM    +  +         L G    + A+   EG M     A+  
Sbjct: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMN----AVKG 176

Query: 180 GDIKVVGQQWVKEWNPTEALSIVENALTRNNNKIDAIVASNDATAGGAIQAL-AAQKLAG 238
             ++++  Q   +++ T+ L+++EN L  N + + A+ A ND  A GA++A+ A+ K   
Sbjct: 177 SKMQLLASQ-PADFDRTKGLNVMENLLAANPD-VQAVFAQNDEMALGALRAIQASGKSVM 234

Query: 239 KVPISGQDADLAAIKRVIDGTQTMTVYKPLKLIASEAAKLSVQLARNEK 287
            V   G D  +AA++R   G    TV +   +I +   + + ++ + EK
Sbjct: 235 IVGFDGTDDGIAAVER---GQLAATVAQQPDMIGAIGIETADKMLKGEK 280