Pairwise Alignments

Query, 378 a.a., D-xylose ABC transporter permease from Pseudomonas simiae WCS417

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  161 bits (408), Expect = 2e-44
 Identities = 103/266 (38%), Positives = 151/266 (56%), Gaps = 20/266 (7%)

Query: 114 MTAYLRIPSFIVGLGGMLAFRGILLGITGGTTIAPVSPSLVYVGQGYLPHSVGIGLGVLL 173
           MT  +      + +G +LA    L G    T +A   P LV V    L        G  L
Sbjct: 75  MTLVILTAGIDLSVGSVLA----LCGAFAATLVAMEVPVLVAVPTALLA-------GAAL 123

Query: 174 FSLTVFLTWKQRRNRALHGLAAHSLVRDLVRVAVIGAVLA-GFVTTLNSYD--------G 224
            +++  +  K +    +  L   +L+R +  V   G  ++ GF  T +++         G
Sbjct: 124 GAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGYTLG 183

Query: 225 IPVPVLLLLVLLGVFSYVTSQTVFGRRVYAVGSNMEATRLSGINVQAVKLWIFGIMGVMC 284
           IPVPV L++V+     Y+ + T FGR VYAVG N  ATRLSGINV  VK+ ++ I G++ 
Sbjct: 184 IPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLA 243

Query: 285 ALAGLVNTARLAAGSPSAGNMGELDAIAACFIGGTSMRGGSGTVYGALLGALVITSLDNG 344
           ALAG++ T+RL++  P+AG   ELDAIAA  +GGTS+ GG G + G L+GAL+I  L+N 
Sbjct: 244 ALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNA 303

Query: 345 MSMLDVDSYWQMIVKGSILVLAVWVD 370
           +++LDV SY+QMI K  +++LAV VD
Sbjct: 304 LNLLDVSSYYQMIAKAVVILLAVLVD 329



 Score = 23.9 bits (50), Expect = 0.007
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 97  LSLVALCGLMIGLANGYMTAYLRIPSFIVGLGGML-AFRGILLGIT 141
           + + A+CGL+  LA   +T+ L       G+G  L A   ++LG T
Sbjct: 233 IGVYAICGLLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGT 278