Pairwise Alignments

Query, 208 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 213 a.a., YheO-like PAS domain from Pseudomonas fluorescens FW300-N1B4

 Score =  366 bits (939), Expect = e-106
 Identities = 184/213 (86%), Positives = 195/213 (91%), Gaps = 5/213 (2%)

Query: 1   MNTAEQDKV-----MQNFRAMADAIATLFFPHAEAVLHDLRSQKVDYIANNLSKRSIGDD 55
           MN  E+D       M NFRA+ADAIATLFFPHAE VLHDLR+QKVDYIANNLSKR IGDD
Sbjct: 1   MNAPEKDSALDATSMDNFRAIADAIATLFFPHAEVVLHDLRTQKVDYIANNLSKREIGDD 60

Query: 56  SALEDMLSDDVSDVNIGPYEKLNWDGQKIRSLSTVLHDHKGRRLAVLCINLNISLFENAK 115
           S+LEDMLS+DVS+ NIGPYEKLNWDGQKIRSLS+VL D +GR LAVLCINLNISLFENAK
Sbjct: 61  SSLEDMLSEDVSERNIGPYEKLNWDGQKIRSLSSVLRDSEGRPLAVLCINLNISLFENAK 120

Query: 116 AALDLFLSPSKLIPQPDSLFRDDWQERINTFLHAWMRERQLSLNLLTRDHKRELVLALHA 175
           AALDLFLSP+KLIPQPDSLFRDDWQERINTFLH W+RERQLSLN+LTRDHKRELVLALHA
Sbjct: 121 AALDLFLSPTKLIPQPDSLFRDDWQERINTFLHTWLRERQLSLNVLTRDHKRELVLALHA 180

Query: 176 EGAFKGKSASNYVANVLGMGRATVYKHLKELKG 208
           EGAFKGKSASNYVANVL MGRATVYKHLKELKG
Sbjct: 181 EGAFKGKSASNYVANVLNMGRATVYKHLKELKG 213