Pairwise Alignments

Query, 739 a.a., Deoxyribose 1-dehydrogenase, beta subunit (from data) from Pseudomonas simiae WCS417

Subject, 772 a.a., dehydrogenase from Sinorhizobium meliloti 1021

 Score = 81.6 bits (200), Expect = 1e-19
 Identities = 98/398 (24%), Positives = 162/398 (40%), Gaps = 46/398 (11%)

Query: 201 FRWIGKPVKRLDAYDKSTGKALYSIDLKVDNMLHAAVQHAPRLGMTVGSLRNQSQVEGMK 260
           F  +GK VKR D  +K TG A Y+ D+ +  MLHA ++ +      + S+ + S+   +K
Sbjct: 16  FTVVGKSVKRSDTLEKVTGTARYAGDVALPGMLHAKMKRSNIAHARIRSI-DTSKALALK 74

Query: 261 GVHSV--------------------------HVLP--------GAVAVVAERWWHAKRAV 286
           GV +V                          ++L         G  AV A     A+RAV
Sbjct: 75  GVKAVLTHEDVPRVLHAGSPHPRSASVTKDQYILDDRVRYWGEGVAAVAAVSEEIAERAV 134

Query: 287 EAIQVDWQEAAADSALRVMPADFSSDKHREFLAAQQGPTRDDENEGDVAGALKGAKTQVE 346
             I+V+++       +       +   H   L   Q         GDV      A   +E
Sbjct: 135 ALIEVEYEPLPGLFTIEAASVPGAPPIHENGLDRNQVLPPVFVTRGDVDRGFAEADLILE 194

Query: 347 ATYHNQYLNHAQLEPPSALARFNPDGTLEIWLPNQAPDMFRADIAKRTGLDPAQITLHSP 406
             Y       A +EP   +++++ +G L +W   Q+  M R  +A+  G+   ++ +   
Sbjct: 195 REYDLGRPTPAYMEPNVCVSQWDGNGKLTMWTSTQSAFMVRGTLAEVLGVPLNKVRVIVD 254

Query: 407 LLGGFFG-RHFLYDSANPYPQAIALAKAVSRPIKLIWSREEEFLRDVLRPLAVVKFRAAL 465
            +GG FG +  L+   N +  A+ LA+   RP+K+ +SR+E FL    R    +  +   
Sbjct: 255 HMGGGFGAKQDLFQ--NEFLCAL-LARQTGRPVKMEFSRKETFLGGRSRHPGKIWLKQGF 311

Query: 466 DDKGLPVAIEA-VSATEGPTEALAGKQGDKIDPTAVEGLSGKSYAIPNKRI-AQIYVKGA 523
              G  VA EA V+   G      G  G  +       L+   Y   N R+  +     +
Sbjct: 312 TKDGRIVAREARVTFNSG----AYGSHGPGVTNVGTAALT-SLYRCENVRLEGRCIYTNS 366

Query: 524 PMLGYWRSVGNSLNDFFYESFLDELADKGGHDPYELRL 561
           P+ G +R  G     +  +  +DE A+K G DP E +L
Sbjct: 367 PIAGAFRGYGVVQTYYALDLMMDEAAEKLGFDPAEFKL 404



 Score = 60.1 bits (144), Expect = 4e-13
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 9/136 (6%)

Query: 607 FGSHTAAIAEVSIENGKVKVHDIWQAIDPGSIVNPAIVEAQVNGAVALGLSQTLLEEAV- 665
           F +H A + EV  E G+V V  +    + G +++P     Q+ G +  G+  TL E+ V 
Sbjct: 621 FAAHFAEV-EVDTETGEVAVLQVVPVHEIGRVIHPIAAAGQIEGGIQQGIGHTLSEDYVI 679

Query: 666 -YVDGKPRARNYDLYPILAPAQMARVHVRVVESGEKMG------GIGEPPLPAVAPAVAN 718
              DG+    ++  Y +     M  +   ++E+    G      G+GE P+ A+ PA+AN
Sbjct: 680 DLTDGRSLNPSFVDYKMPLSMDMPSIRTIILETAPDPGGPYGAKGVGEDPIIAIGPAIAN 739

Query: 719 AVAQLTGQRVRSLPLS 734
           A+    G R    P++
Sbjct: 740 AIYDAIGVRFHHYPIT 755



 Score = 38.1 bits (87), Expect = 2e-06
 Identities = 53/232 (22%), Positives = 83/232 (35%), Gaps = 32/232 (13%)

Query: 36  LGAGRVQAATSAERGT--QVPAFLEIRPDGTVRLLSPFMEGGQGTHTAMAQIVGEELDAD 93
           +G G     +SA  G   Q  A +++  DGTV L++     G G HTA++QIV EEL   
Sbjct: 455 IGIGCEMHGSSAYPGIKEQGNAIVKMNEDGTVTLITGTAGLGTGAHTALSQIVAEELGV- 513

Query: 94  PATFIVEAAPPGEAYVVMENGLRITGGSMSVRMSYPT------MRRLGALARAMLLQAGA 147
                     P EA  V++    I    +    S+ T       +   A  R  +L+  A
Sbjct: 514 ----------PFEAVSVVQGDTDIVPWDIGAFASHTTYLGGRAAQLAAADVRRQVLEHAA 563

Query: 148 KQWGVPVGELTTQPGRVVHA-ASGRSLGYGELASSALDMPVPDPASITLRDPSQFRWIGK 206
                    L  + G VV    S RS+   E       MP      +    P++      
Sbjct: 564 PMLKAEPENLAIRDGFVVVTNGSNRSIRLSEAVGPQRGMPAVQLVGVGTYMPTK------ 617

Query: 207 PVKRLDAYDKSTGKALYSIDLKVDNMLHAAVQHAPRLGMTVGSLRNQSQVEG 258
                 +Y  +   A   +D +   +    V     +G  +  +    Q+EG
Sbjct: 618 ------SYSFAAHFAEVEVDTETGEVAVLQVVPVHEIGRVIHPIAAAGQIEG 663