Pairwise Alignments

Query, 486 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 459 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score = 61.6 bits (148), Expect = 5e-14
 Identities = 88/369 (23%), Positives = 152/369 (41%), Gaps = 52/369 (14%)

Query: 39  ETLSVSLKTTNRQSALATAAHLLGTLRAFHLDTPDATWQDLKDNLLDIAKDILKTRSVWD 98
           E+++VSL+T +R+ A   + +L   L        D  +  +++ L +IAK  L  R   D
Sbjct: 90  ESVTVSLRTESRREAKMRSDYLKDRLLEQAGSFID--FNHMRETLKEIAKAELLRRPKVD 147

Query: 99  QLGDTRLVYRDVRKDLNEISSTEPLSIDQARAVSYGKRITTAGERRD-EGDMGPILAIIA 157
                 ++       + + +  E  +++Q R +     I   G + D EG +  I ++ +
Sbjct: 148 WFYRGNII-------VAQEALQEAQTVEQVRFIQSYSDIMKKGLQSDTEGLLSIIDSVDS 200

Query: 158 ELGEGEGRTDWKPEISVPSVVGTAPASKTLTFKTLADTYLEER------------KEDVK 205
           E  +     D K               ++LT   L D Y+ ++            K+  K
Sbjct: 201 EQSKHSEPQDHKEH---------KEHKESLTIDELIDNYIADKISSGEWMESTKEKKGAK 251

Query: 206 ASSMRSMKACCDILVGVLGEMDMATHSRADLVGVRETL-KEGRKPVTVNKIVTQMTTILN 264
              ++++   C +    + ++     +R DL+ VR  L   G K +TVN  +  +  I N
Sbjct: 252 LQHLKTIFEACSLKDKPIDKL-----TRNDLLEVRTALINRGLKTLTVNGYMQDIRAIFN 306

Query: 265 WAVDNGHIKQAFGKKLQLTKGAESGRIPFSQEQIAKLI------------QCANSLPADD 312
            A   G I ++   KL +           ++ ++  LI            +   +L    
Sbjct: 307 NAEALGLIGKSPAVKLNIKDRDIKEPKALTESEVIALIDYFKHGYFTEARRSKKTLEGMK 366

Query: 313 WKRWAVTLGVISGARIGEIHQLTTVDIVEIDNVL--VMDINTNDGKGTKNKFSIRKVPLV 370
           + +W   +  ++GAR+ EI QL   DI +  N L   +DIN       KNK S R VPLV
Sbjct: 367 YLKWVPQIAAVTGARLNEILQLRKGDIRQSANGLCWYIDINDRGDNVVKNKSSNRIVPLV 426

Query: 371 D-IYGVDLE 378
           D  YG DLE
Sbjct: 427 DGAYGFDLE 435