Pairwise Alignments

Query, 607 a.a., excinuclease ABC subunit C from Pseudomonas simiae WCS417

Subject, 646 a.a., Probable excinuclease ABC (subunit C-nuclease) UvrC from Mycobacterium tuberculosis H37Rv

 Score =  355 bits (910), Expect = e-102
 Identities = 228/629 (36%), Positives = 334/629 (53%), Gaps = 45/629 (7%)

Query: 18  PGVYRMFDSEARLLYVGKAKNLKNRLASYFRK-SGLAPKTAALVARIAQVETTITANETE 76
           PGVYR  D   R++YVGKAK+L++RL SYF   + LAP+T  LV   A+VE T+   E E
Sbjct: 18  PGVYRFRDQHGRVIYVGKAKSLRSRLTSYFADVASLAPRTRQLVTTAAKVEWTVVGTEVE 77

Query: 77  ALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGN-FPRLSIHRGAKKQKGKYFGPYPSA 135
           AL LE T IKE+ P +N+  RDDKSYP + ++ G  FPRL ++RG +++  +YFGPY  A
Sbjct: 78  ALQLEYTWIKEFDPRFNVRYRDDKSYPVLAVTLGEEFPRLMVYRGPRRKGVRYFGPYSHA 137

Query: 136 GAIRESLSLLQKTFFVRQCEDSFYKNRT---RPCLQYQIKRCKAPCVGLVEPAEYAEDVR 192
            AIRE+L LL + F  R C    +K      RPCL   I +C APC+G V+ A++ + V 
Sbjct: 138 WAIRETLDLLTRVFPARTCSAGVFKRHRQIDRPCLLGYIDKCSAPCIGRVDAAQHRQIVA 197

Query: 193 HSVMFLEGRSNALTDELSGAMEQAASTLDFERAAELRDQISLLRRVQDQQSMEGGTG-DV 251
               FL G+++     L   M  AA  LDFERAA LRD +S L+R  ++Q++  G G D 
Sbjct: 198 DFCDFLSGKTDRFARALEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVVLGDGTDA 257

Query: 252 DVIAAFVNPGGACVHLISVRGGRVLGSKNFFPQTGID--EDVAEVMAAFLGQYYVSSPER 309
           DV+A   +   A V +  VRGGRV G + +  +   +  +   +++  FL Q+Y      
Sbjct: 258 DVVAFADDELEAAVQVFHVRGGRVRGQRGWIVEKPGEPGDSGIQLVEQFLTQFYGDQAAL 317

Query: 310 D---------LPSELIVNVVHEDFPTLIEAIHELRGRELDISHRVRGTRARWQQLAVTNA 360
           D         +P E++V  +  +   L   +  LRG  + +    RG +    +    NA
Sbjct: 318 DDAADESANPVPREVLVPCLPSNAEELASWLSGLRGSRVVLRVPRRGDKRALAETVHRNA 377

Query: 361 EQALSA----RLANRQHVAARFDALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGP 416
           E AL      R ++    +A   ++ + L L + P R+EC D+SH  G   V S VVF  
Sbjct: 378 EDALQQHKLKRASDFNARSAALQSIQDSLGLADAPLRIECVDVSHVQGTDVVGSLVVFED 437

Query: 417 EGPIKSDYRRYNIE---GVTAGDDYAAMHQALTRRFSK---------LKDGEGKL----- 459
             P KSDYR + I    G    DD A + +   RRF +         L   E K      
Sbjct: 438 GLPRKSDYRHFGIREAAGQGRSDDVACIAEVTRRRFLRHLRDQSDPDLLSPERKSRRFAY 497

Query: 460 -PDILLVDGGKGQLSMARDVLNELAVPDLILLGVAKGATRKAGFETLYLNDAAHEFTLKG 518
            P++ +VDGG  Q++ A  V++EL V D+ ++G+AK        E +++        +  
Sbjct: 498 PPNLYVVDGGAPQVNAASAVIDELGVTDVAVIGLAKR------LEEVWVPSEPDPIIMPR 551

Query: 519 DSPALHLIQQIRDEAHRFAITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQEL 578
           +S  L+L+Q++RDEAHRFAIT HR++R      S L+ V G+G  RR+ L+ HFG +  L
Sbjct: 552 NSEGLYLLQRVRDEAHRFAITYHRSKRSTRMTASALDSVPGLGEHRRKALVTHFGSIARL 611

Query: 579 SRASIDEIAKAPGISKKLAELIYANLHSE 607
             A++DEI   PGI    A  ++  L  +
Sbjct: 612 KEATVDEITAVPGIGVATATAVHDALRPD 640